New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5858833	37 (0.710)	4 (0.080)	4/252	NT	10.5%	intergenic (+11/+127)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	= 5858940	33 (0.670)					intergenic (+118/+20)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein

AAAAGGCCTGGCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5858680‑5858833 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagggtCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCG  <  NC_002947/5858940‑5858855                                                                                                                                                                                                                                                  AAAATGCCTGGACGGAGCGCACGTTTCCGGAGGCGTTGGTTAAAGCGCGGTCGCACGCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAG                                                                                              <  5:248146/148‑1  AAAGGCCTGGCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAG                                                                                              >  2:278194/1‑147  AAAGGCCTGGCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAG                                                                                              >  4:86997/1‑147      GCCTGGCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGT                                                                                        >  4:106853/1‑149                                                       ACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACG                                       >  4:230086/1‑149                                                                                             AATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGC   <  3:230086/147‑1                                                                                               TCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCG  <  7:247150/146‑1                                                                                               TCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCG  >  8:247150/1‑146                                                                                                                                                                                                                                                  AAAAGGCCTGGCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5858680‑5858833 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagggtCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCG  <  NC_002947/5858940‑5858855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.