New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5858833	37 (0.710)	4 (0.080)	4/252	NT	10.5%	intergenic (+11/+127)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	= 5858940	33 (0.670)					intergenic (+118/+20)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein

GGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATAATCCGCCG  >  NC_002947/5858835‑5859084                                                                                                          |                                                                                                                                                 ggCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGa                                                                                                       >  3:185302/1‑149 (MQ=255)         cgcgGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCAc                                                                                                                >  1:20013/1‑132 (MQ=255)         cgcgGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCAc                                                                                                                <  2:20013/132‑1 (MQ=255)            gggTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCGCCACCAATCCGGCGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGCCCCTGCAAGAGTGAGGCGTTACTGCTGGGCCACCTTCGCCGACTTGCCGTCAt                                                                                            >  7:257263/1‑149 (MQ=37)                     cGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGaccctgctggctcaaatctgtgaaaccagcgcctccaactgctcctgccgctcagcctga                                                                                      >  8:247150‑M2/1‑86 (MQ=255)                     cGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGaccctgctggctcaaatctgtgaaaccagcgcctccaactgctcctgccgctcagcctga                                                                                      <  7:247150‑M2/146‑61 (MQ=255)                     cGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGGAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTgc                                                                                   >  8:150332/1‑149 (MQ=255)                      gCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGaccctgctggctcaaatctgtgaaaccagcgcctccaactgctcctgccgctcagcctgatt                                                                                    <  3:230086‑M2/147‑63 (MQ=255)                      gCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACtt                                                                                                    >  1:151080/1‑131 (MQ=255)                      gCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACtt                                                                                                    <  2:151080/131‑1 (MQ=255)                          cTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCAt                                                                              >  4:179833/1‑149 (MQ=255)                           tACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCAtt                                                                             >  5:31863/1‑149 (MQ=255)                           tACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCAtt                                                                             >  5:283205/1‑149 (MQ=255)                                  ggcCTTTGTACAACCACCGATGTGCGTCCCCCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGc                                                                         >  4:54354/1‑146 (MQ=255)                                           aCAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCAt                                                                              >  2:319444/1‑132 (MQ=255)                                           aCAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCAt                                                                              <  1:319444/132‑1 (MQ=255)                                           aCAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGt                                                              >  7:223351/1‑148 (MQ=255)                                             aaCCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCAc                                                           >  7:26872/1‑149 (MQ=255)                                                 accGAGGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCCACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACggat                                                       >  7:292396/1‑147 (MQ=255)                                                     aTGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTgc                                                                                   <  2:315274/117‑1 (MQ=255)                                                     aTGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTgc                                                                                   >  1:315274/1‑117 (MQ=255)                                                     aTGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTa                                                   <  6:31863/149‑1 (MQ=255)                                                          cGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGaccctgctggctcaaatctgtgaaaccagcgcctccaactgctcctgccgctcagcctgattcagcttggccccgggattcagggtggaccactgcgggt                                              >  4:230086‑M2/1‑49 (MQ=255)                                                                 caccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGa                                         <  7:89251/147‑1 (MQ=255)                                                                 caccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGa                                         >  8:89251/1‑147 (MQ=255)                                                                 caccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGAGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGAc                                        >  5:123769/1‑148 (MQ=255)                                                                  accaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACa                                       >  3:74484/1‑148 (MQ=255)                                                                           gCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCt                             >  4:312947/1‑149 (MQ=255)                                                                                ttcgCGGGTAAACCCGCGAAGAGGCCGACCCTGAAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTc                                  >  2:40825/4‑139 (MQ=255)                                                                                ggAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATc                        <  6:283205/149‑1 (MQ=255)                                                                                  aGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCaa                      >  1:163869/1‑149 (MQ=255)                                                                                             ccGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCa            >  5:62223/1‑148 (MQ=255)                                                                                             ccGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCa            >  6:150291/1‑148 (MQ=255)                                                                                             ccGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCa            >  4:218579/1‑148 (MQ=255)                                                                                              cgcgAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATa          <  3:179833/149‑1 (MQ=255)                                                                                               gcgAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATaa         <  8:223351/149‑1 (MQ=255)                                                                                               gcgAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATa          >  8:221211/1‑148 (MQ=255)                                                                                                      ggCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATAATccgccg  <  4:74484/149‑1 (MQ=255)                                                                                                       gCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTAGATCAACCgctgc               >  2:161615/1‑135 (MQ=255)                                                                                                       gCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTAGATCAACCgctgc               <  1:161615/135‑1 (MQ=255)                                                                                                          |                                                                                                                                                 GGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATAATCCGCCG  >  NC_002947/5858835‑5859084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.