New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5858833	37 (0.710)	4 (0.080)	4/252	NT	10.5%	intergenic (+11/+127)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	= 5858940	33 (0.670)					intergenic (+118/+20)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein

GCCTGGCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACC  >  NC_002947/5858685‑5858927                                                                                                                                                     |                                                                                                gCCTGGCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGT                                                                                                 >  4:106853‑M1/1‑149 (MQ=255)  ccTGGAGTGAGGTGATGTTGCCGTAGGCGTTGGTATATGCGCGGGCGCACCCGCAGTGGTCCTTGGTGCATCCGGTTGCCATGCTGAATCAGTTTGTGCTGCAGGAGCAGTTGGTGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGtt                                                                                                <  2:304899/149‑1 (MQ=255)      gCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGcc                                                                                            >  2:2169/1‑149 (MQ=255)               cAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCgg                                                                                   <  1:28983/149‑1 (MQ=255)                aaGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCggg                                                                                  <  2:304893/149‑1 (MQ=255)                 aGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGt                                                                                 <  2:185360/149‑1 (MQ=255)                      ccGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAAc                                                                             <  3:106853/148‑1 (MQ=255)                               ttGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTAc                                                                   <  7:193960/149‑1 (MQ=255)                                  gTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACggg                                                                >  8:38341/1‑149 (MQ=255)                                  gTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACggg                                                                >  8:108131/1‑149 (MQ=255)                                   tCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGCGTAAACCCGCTCCTACGggc                                                               >  4:2300/1‑149 (MQ=255)                                     aaaGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACgg                                                                 <  6:235797/145‑1 (MQ=255)                                     aaaGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACgg                                                                 >  5:235797/1‑145 (MQ=255)                                        gcgcGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCt                                                          <  1:64940/149‑1 (MQ=255)                                          gcgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCttt                                                        <  1:2169/149‑1 (MQ=255)                                          gcgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCttt                                                        <  7:108131/149‑1 (MQ=255)                                          gcgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCttt                                                        <  1:278194/149‑1 (MQ=255)                                          gcgGGCGCACCCGCAGTGCTCCACCCTGAATCCCGGGGCCAAGCTGAATCACGCGGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCttt                                                        <  4:300315/149‑1 (MQ=255)                                                  aCCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTcggcctcttcgcgggtaaacccgctcctacgccggattggtggtggacg                                                >  4:230086‑M1/1‑100 (MQ=255)                                                     cGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTAAGGGCGGCCTTTGTACAa‑ccacc                                            <  6:252408/149‑1 (MQ=255)                                                      gCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCg                                           <  7:38341/149‑1 (MQ=255)                                                       cAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGa                                          <  3:2300/149‑1 (MQ=255)                                                            gtcctgccTGTATCCCGGTGTCAAGCTGAATCAGGCTCTGCTGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGc                                     <  2:94828/143‑1 (MQ=38)                                                            gTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGc                                     >  7:229380/1‑149 (MQ=255)                                                                           cGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCACCAATcc                      >  2:29244/1‑149 (MQ=255)                                                                              ggCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCACCAATCCGGc                   <  3:84533/149‑1 (MQ=255)                                                                               gCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCCACCGATGTGCGTCCACCACCAATCCGGc                   <  1:29244/149‑1 (MQ=255)                                                                                 cAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGc                                     <  7:18891/128‑1 (MQ=255)                                                                                 cAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGc                                     >  8:18891/1‑128 (MQ=255)                                                                                  aaGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGAtgt                                       >  6:197380/1‑125 (MQ=255)                                                                                  aaGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGAtgt                                       <  5:197380/125‑1 (MQ=255)                                                                                  aaGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCACCAATCCGGCGTAg               >  8:266831/1‑149 (MQ=255)                                                                                        aaTCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTcggcctcttcgcgggtaaacccgctcctacgccggattggtggtggacgcacatcggtggttgtacaaaggccgcccgtaggagc            <  3:230086‑M1/147‑86 (MQ=255)                                                                                         aTCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCggg        <  7:266831/149‑1 (MQ=255)                                                                                          tCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTcggcctcttcgcgggtaaacccgctcctacgccggattggtggtggacgcacatcggtggttgtacaaaggccgcccgtaggagcg           >  8:247150‑M1/1‑60 (MQ=255)                                                                                          tCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTcggcctcttcgcgggtaaacccgctcctacgccggattggtggtggacgcacatcggtggttgtacaaaggccgcccgtaggagcg           <  7:247150‑M1/146‑87 (MQ=255)                                                                                          tCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACCGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCCCCACTCCGGCGTAGGAGCGGGt       >  6:316059/1‑149 (MQ=255)                                                                                             ggCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTa    <  3:86997/149‑1 (MQ=255)                                                                                               cTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTAcc  <  8:229380/149‑1 (MQ=255)                                                                                                                  ggAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCACCAATCCGGCGTAg               >  2:136745/1‑117 (MQ=255)                                                                                                                  ggAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCACCAATCCGGCGTAg               <  1:136745/117‑1 (MQ=255)                                                                                                                  ggAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCgg         <  6:264989/123‑1 (MQ=255)                                                                                                                  ggAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCgg         >  5:264989/1‑123 (MQ=255)                                                                                                                    aGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTccaccac                            >  2:173065/1‑102 (MQ=255)                                                                                                                                                     |                                                                                                GCCTGGCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAA‑CCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACC  >  NC_002947/5858685‑5858927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.