New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 598273569 (1.330)3 (0.060) 3/254 NT 4.5% coding (3380/5049 nt) PP_5242 GAF domain‑containing sensor histidine kinase
?NC_002947 = 5982793 61 (1.230)coding (3438/5049 nt) PP_5242 GAF domain‑containing sensor histidine kinase
Rejected: Frequency below/above cutoff threshold.

CGCCGCCATGTGCGCCTTCTACATGGGCAATATCCCAAAGACCATGCGCGACCTGGCATTGGCCGGCGACAACACCTGGGCCGCACCGGCGCACATCAACCTGGCCGACTATCACCTGTTCCGCGGCCTGGCCCTGGGCAGCCCCGAGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5982583‑5982735
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccaGCGGCTGAATCGCTCGCGCAGGGCCTGCAGCTCGCGCAGCTTGTCGGCAAGGCTGCCGTGGGCCTCGGGGCTGCCCAGGGCCAGGCCGCGGAACAGGTGATAGTCGGCCAGGTTGATGTGCGCCGGTGCGGCCCAGGTGTTGTCGCCG  <  NC_002947/5982793‑5982646
                                                                                                                                                                                                                                                                                                             
CGCCGCCATGTGCGCCTTCTACATGGGCAATATCCCAAAGACCATGCGCGACCTGGCATTGGCCGGCGACAACACCTGGGCCGCACCGGCGCACATCAACCTGGCCGACTATCACCTGTTCCGCGGCCTGGCCCTGGGCAGCCCCGAG                                                                                                                                                           <  6:264423/148‑1
 GCCGCCATGTGCGCCTTCTACATGGGCAATATCCCAAAGACCATGCGCGACCTGGCATTGGCCGGCGACAACACCTGGGCCGCACCGGCGCACATCAACCTGGCCGACTATCACCTGTTCCGCGGCCTGGCCCTGGGCAGCCCCGAGG                                                                                                                                                          <  2:85884/148‑1
                                                                      AACACCTGGGCCGCACCGGCGCACATCAACCTGGCCGACTATCACCTGTTCCGCGGCCTGGCCCTGGGCAGCCCCGAGGCCCAGCGGCTGAATCGCTCGCGCAGGGCCTGCAGCTCGCGCAGCTTGTCGGCAAGGCTGCCGTGGGC                                                                                       <  5:100360/146‑1
                                                                      AACACCTGGGCCGCACCGGCGCACATCAACCTGGCCGACTATCACCTGTTCCGCGGCCTGGCCCTGGGCAGCCCCGAGGCCCAGCGGCTGAATCGCTCGCGCAGGGCCTGCAGCTCGCGCAGCTTGTCGGCAAGGCTGCCGTGGGC                                                                                       >  6:100360/1‑146
                                                                       ACACCTGGGCCGCACCGGCGCACATCAACCTGGCCGACTATCACCTGTTCCGCGGCCTGGCCCTGGGCAGCCCCGAGGCCCAGCGGCTGAATCGCTCGCGCAGGGCCTGCAGCTCGCGCAGCTTGTCGGCAAGGCTGCCGTGGGCCTCG                                                                                   <  4:70987/149‑1
                                                                                                                                                     CCCAGCGGCTGAATCGCTCGCGCAGGGCCTGCAGCTCGCGAAGCTTGTCGGCAAGGCCGCCGTGGACCTCGGGGCTGCCCAGGGCCAGGCCGCGGAACAGGTGATAGTCGGCCAGGTTGATGTGCGCCGGTGCGGCCCAGGTGTTGTCG     <  6:59183/149‑1
                                                                                                                                                        AGCGGCTGAATCGCTCGCGCAGGGCCTGCAGCTCGCGCAGCTTGTCGGCAAGGCTGCCGTGGGCCTCGGGGCTGCCCAGGGCCAGGCCGCGGAACAGGTGATAGTCGGCCAGGTTGATGTGCGCCGGTGCGGCCCAGGTGTTGTCGCCG  <  8:10236/149‑1
                                                                                                                                                        AGCGGCTGAATCGCTCGCGAAGTGCCTGCAGCTCGCGCAGCTTGTCGGCAAGGCTGCCGTGGGCCTCGGGTCTGCCCAGGGCCAGGCCGCGGAACAGTTGATAGTCGTCCATGTTGATGTGCGCCGGTGCTGCCCAGGTGTTGTCGCCG  <  8:5539/149‑1
                                                                                                                                                                                                                                                                                                             
CGCCGCCATGTGCGCCTTCTACATGGGCAATATCCCAAAGACCATGCGCGACCTGGCATTGGCCGGCGACAACACCTGGGCCGCACCGGCGCACATCAACCTGGCCGACTATCACCTGTTCCGCGGCCTGGCCCTGGGCAGCCCCGAGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5982583‑5982735
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccaGCGGCTGAATCGCTCGCGCAGGGCCTGCAGCTCGCGCAGCTTGTCGGCAAGGCTGCCGTGGGCCTCGGGGCTGCCCAGGGCCAGGCCGCGGAACAGGTGATAGTCGGCCAGGTTGATGTGCGCCGGTGCGGCCCAGGTGTTGTCGCCG  <  NC_002947/5982793‑5982646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.