New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6059891	39 (0.750)	6 (0.120)	6/254	NT	14.2%	coding (931/1404 nt)	PP_5311	signal transduction protein
	?	NC_002947	= 6059929	35 (0.700)					coding (969/1404 nt)	PP_5311	signal transduction protein

ACCTGGCCCTGGGCCTGGCGCTGGGCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6059754‑6059891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcagTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGCACGAGGCATGGCGCGGGTGAGGCCTTCGATGATCGCGGCGGTGTAGATCGATTGTTGCCAGTAGGGCGTGGCCTGCTGCGGTTGGTCTTTGGGTAGGCTCAAGGTC  <  NC_002947/6059929‑6059782                                                                                                                                                                                                                                                                                                 ACCTGGCCCTGGGCCTGGCGCTGGGCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGAAACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGTAGCCCGGC                                                                                                                                             >  1:98196/1‑147        CCTGGGCCTGGCGCTGGGCAAGACCTTGACCCAACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACAGCCGCGATCATCGAAGGCCTCACCCCCGCCA‑TGCCTCGTGAAGTAGCCCGGCCACGTAGGT                                                                                                                                    >  2:252180/1‑149                                     GCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATTTCCTCGTGCAGTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGCACGA                                                                                                        <  1:252180/149‑1                                     GCCTACCCAAAGACCAACAGAAGCATTATACTCAATACTGGCAACAATAGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGCACGAG                                                                                                       <  2:98196/149‑1                                             AAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTG                                                                                                                                                         <  5:268115/91‑1                                             AAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTG                                                                                                                                                         >  6:268115/1‑91                                                   CAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGC                                                                                                            <  1:321163/130‑1                                                   CAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGC                                                                                                            >  2:321163/1‑130                                                                                                                                        GCAGTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGCACGAGGCATGGCGCGGGTGAGGCCTTCGATGATCGCGGCGGTGTAGATCGATTGTTGCCAGTAGGGCGTGGCCTGCTGCGGTTGGTCTTTGGGTAGGCTCAAG     <  1:60521/149‑1                                                                                                                                           GTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGTGTTCTGCACGAGGCATGGCGCGGGTGAGGCCTTCGATGATCGCGGCGGTGTAGATCGATTGTTGCCAGTAGGGCGTGGCCTGCTGCGGTTGGTCTTTGGGTAGGCTCAAGGTC  >  5:311324/1‑149                                                                                                                                                                                                                                                                                                 ACCTGGCCCTGGGCCTGGCGCTGGGCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6059754‑6059891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcagTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGCACGAGGCATGGCGCGGGTGAGGCCTTCGATGATCGCGGCGGTGTAGATCGATTGTTGCCAGTAGGGCGTGGCCTGCTGCGGTTGGTCTTTGGGTAGGCTCAAGGTC  <  NC_002947/6059929‑6059782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.