New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6059891	39 (0.750)	6 (0.120)	6/254	NT	14.2%	coding (931/1404 nt)	PP_5311	signal transduction protein
	?	NC_002947	= 6059929	35 (0.700)					coding (969/1404 nt)	PP_5311	signal transduction protein

GACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGCAACACTTGCTGGGCATCAGCCGCGAACAGATCGGT  >  NC_002947/6059782‑6060073                                                                                                                                                     |                                                                                                                                                 gACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACACCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTAc                                                                                                                                                 >  5:311324‑M2/1‑148 (MQ=255)    cTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTActgc                                                                                                                                              <  1:60521‑M2/149‑5 (MQ=255)         gCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGAACCCGAAAATCAAAGCCAAAACCCGCCCCATGCAACGTGAATAACCCCCCCAGGCCGGCCTCCCATACATGGCCGGGCTAATGcaca                                                                                                                                           >  1:92922/1‑148 (MQ=255)                    gACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACct                                                                                                                              <  3:50092/149‑1 (MQ=255)                       cAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CAGCGATCAACGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCCGGCTCACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACctgct                                                                                                                           >  2:92860/1‑149 (MQ=255)                        aaCCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGCGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACctgctg                                                                                                                          >  8:187332/1‑149 (MQ=255)                             cagcagGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGgc                                                                                                                     >  1:202855/1‑149 (MQ=255)                                     cACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACctg                                                                                                                             <  8:98509/133‑1 (MQ=255)                                     cACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACctg                                                                                                                             >  7:98509/1‑133 (MQ=255)                                     aactgcatACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACgtgt                                                                                                             <  2:202855/142‑1 (MQ=255)                                                    tcaaTAGATGTACACCG‑CATCGATCATCGAAGGCCTCACGCGCGCCATGCGTCGTGAAGAACGCCACGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCAGAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTtct                                                                                              <  8:81354/148‑1 (MQ=255)                                                       aTCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGc                                                                                           <  1:123753/149‑1 (MQ=255)                                                                 acCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTAACTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTgccg                                                                                 >  8:150085/1‑149 (MQ=255)                                                                   cg‑ccgcGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTgccgc                                                                                >  6:571/1‑148 (MQ=255)                                                                    g‑ccgcGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCa                                                                              >  3:65170/1‑149 (MQ=255)                                                                      ccgcGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCAc                                                                             <  3:82493/149‑1 (MQ=255)                                                                           atcatcGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGa                                                                        <  2:92922/149‑1 (MQ=255)                                                                            tcatcGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAg                                                                       <  4:65170/149‑1 (MQ=255)                                                                                 gAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCccg                                                                                                        <  6:10895/111‑1 (MQ=255)                                                                                 gAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCccg                                                                                                        >  5:10895/1‑111 (MQ=255)                                                                                  aaGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGCCCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAAc                                                                 >  7:241211/1‑149 (MQ=255)                                                                                  aaGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAAc                                                                 <  1:53541/149‑1 (MQ=255)                                                                                    ggCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAAccc                                                               <  2:60521/149‑1 (MQ=255)                                                                                          aCCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCAt                                                           <  1:146150/147‑1 (MQ=255)                                                                                            ccGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGa                                                       <  3:260739/149‑1 (MQ=255)                                                                                                       cTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTActgcacgaggcatggcgcgggtgaggccttcgatgatcgcggcggtgtagatctattgttgccagtattgagtataatgcttctgttggtctttgggtaggc                                            <  2:98196‑M2/149‑103 (MQ=255)                                                                                                        tCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTActgcacgaggaaatggcgcgggtgaggccttcgatgatcgcggcggtgtagatcgattgttgccagtagggcgtggcctgctgcggttggtctttgggtaggc                                           <  1:252180‑M2/149‑104 (MQ=255)                                                                                                        tCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTAtg                                           >  4:103233/1‑149 (MQ=255)                                                                                                        tCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTAtg                                           >  4:270330/1‑149 (MQ=255)                                                                                                          gtgtAGAACGCCCCTAGGCCGGGCTGACCTACCTGGCCGGTCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCAAGTGTTCACGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTAtgtg                                         <  7:290239/149‑1 (MQ=255)                                                                                                           tGCTGAACGCCCCGAGGCGGGGCTGACCTCCCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCTCATTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTgg                                        <  1:92860/149‑1 (MQ=255)                                                                                                            gCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTActgcacgaggcatggcgcgggtgaggccttcgatgatcgcggcggtgtagatcgattgttgccagtagggcgtggcctgctgcggttg                                                          <  1:321163‑M2/130‑89 (MQ=255)                                                                                                            gCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTActgcacgaggcatggcgcgggtgaggccttcgatgatcgcggcggtgtagatcgattgttgccagtagggcgtggcctgctgcggttg                                                          >  2:321163‑M2/1‑42 (MQ=255)                                                                                                                     cccGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGCAacac                                <  5:306100/147‑1 (MQ=255)                                                                                                                     cccGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGCAacac                                >  6:306100/1‑147 (MQ=255)                                                                                                                      ccGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGc                                     <  5:192712/141‑1 (MQ=255)                                                                                                                      ccGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGc                                     >  6:192712/1‑141 (MQ=255)                                                                                                                      ccGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGCAACACTTg                             >  1:113647/1‑149 (MQ=255)                                                                                                                        gAGGCCGGGCTGACCTACCTGGCAGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCAGCCGCAATTCTCGCTGATTTGCCGCCACCTTGAGTTCAACCCGCATTTGAACCACACATATGTGGAGCAACACTTGCt                           >  8:135334/1‑149 (MQ=255)                                                                                                                            ccGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGCAACACTTGCTggg                        >  4:210963/1‑148 (MQ=255)                                                                                                                            ccGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGCAACACTTGCTGGGc                       <  7:187332/149‑1 (MQ=255)                                                                                                                                    acctacgtGGCCGGGCTActtcacgaggcatggcgggggtgaggccttcgatgatcgcggctgtgtagatcgattgttgccagtagggcgtggcctgctgcggttggtctttgggttgggtcaaggtcttgcccagcgccaggcccagg               >  2:252180‑M2/1‑18 (MQ=255)                                                                                                                                            ggCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGCAACACTTGCTGGGCATCAGCCGCGaa           >  7:249911/1‑145 (MQ=255)                                                                                                                                             gCCGGGCTActgcacgaggcatggcgcgggtgaggccttcgatgatcgcggcggtgtagatcgattgttgccagtagggcgtttcctgctgcggttggtctttgggtaggctcaaggtcttgcccagcgccaggcccagggccaggt        >  1:98196‑M2/1‑9 (MQ=255)                                                                                                                                                 ggCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGCAACACTTGCTGGGCATCAGCCGCGAACAGATCGGt  <  3:270330/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGCAACACTTGCTGGGCATCAGCCGCGAACAGATCGGT  >  NC_002947/6059782‑6060073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.