New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6059891	39 (0.750)	6 (0.120)	6/254	NT	14.2%	coding (931/1404 nt)	PP_5311	signal transduction protein
	?	NC_002947	= 6059929	35 (0.700)					coding (969/1404 nt)	PP_5311	signal transduction protein

ACCTGGCCCTGGGCCTGGCGCTGGGCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGCA  >  NC_002947/6059754‑6060039                                                                                                                                            |                                                                                                                                                     aCCTGGCCCTGGGCCTGGCGCTGGGCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAg                                                                                                                                           <  5:282486/149‑1 (MQ=255) aCCTGGCCCTGGGCCTGGCGCTGGGCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGAAACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGtagcccggc                                                                                                                                             >  1:98196‑M1/1‑138 (MQ=255)  ccTGGCCCTGGGCCTGGCGCTGGGCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACACCCCGAgg                                                                                                                                          >  6:311324/1‑149 (MQ=255)      gCCCTGGTCCTGGCTCTGTGCAAGACCTTGAGCCTACCCAAAGACCAAAGTTTTTTTTTTAATGATTAGTGGAAAAAATAGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCgg                                                                                                                                      <  2:308304/149‑1 (MQ=255)      gCCCTGGGCCTGGCGCTGGGCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCg                                                                                                                                       <  1:305574/148‑1 (MQ=255)        ccTGGGCCTGGCGCTGGGCAAGACCTTGACCCAACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACAG‑CCGCGATCATCGAAGGCCTCACCCCCGCCA‑TGCCTCGTGAAGtagcccggccacgtaggt                                                                                                                                    >  2:252180‑M1/1‑131 (MQ=255)                 ggCGCTGGGCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGacctac                                                                                                                            >  4:260739/1‑148 (MQ=255)                     cTGGGCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGc                                                                                                                       >  2:53541/1‑149 (MQ=255)                        ggCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCgg                                                                                                                    <  5:129299/149‑1 (MQ=255)                        ggCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCgg                                                                                                                    >  2:123753/1‑149 (MQ=255)                          cAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCggg                                                                                                                   >  7:81354/1‑148 (MQ=255)                          cAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGc                                                                                                                  >  4:50092/1‑149 (MQ=255)                             gACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACACCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTAc                                                                                                               >  5:311324‑M2/1‑148 (MQ=255)                                cTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTActgc                                                                                                            <  1:60521‑M2/149‑5 (MQ=255)                                     gCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGAACCCGAAAATCAAAGCCAAAACCCGCCCCA‑TGCAACGTGAATAACCCCCCCAGGCCGGCCTCCCATACATGGCCGGGCTAATGcaca                                                                                                         >  1:92922/1‑148 (MQ=255)                                     gCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCATTTCCTCGTGCAGtagcccggccaggtaggtcagcccggcctcggggcgttctgcacga                                                                                                        <  1:252180‑M1/149‑47 (MQ=255)                                     gCCTACCCAAAGACCAACAGAAGCATTATACTCAATACTGGCAACAATAGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGtagcccggccaggtaggtcagcccggcctcggggcgttctgcacgag                                                                                                       <  2:98196‑M1/149‑48 (MQ=255)                                            cAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGTCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCg                                                                                                                                       <  1:327490/110‑1 (MQ=255)                                            cAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCCCCA‑TCCCACCTGCAGAACGCCCCGAGGCCg                                                                                                                                       >  2:327490/1‑110 (MQ=255)                                                gACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACct                                                                                            <  3:50092/149‑1 (MQ=255)                                                   cAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGtagcccggccaggtaggtcagcccggcctcggggcgttctgc                                                                                                            <  1:321163‑M1/130‑43 (MQ=255)                                                   cAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGtagcccggccaggtaggtcagcccggcctcggggcgttctgc                                                                                                            >  2:321163‑M1/1‑88 (MQ=255)                                                   cAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CAGCGATCAACGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCCGGCTCACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACctgct                                                                                         >  2:92860/1‑149 (MQ=255)                                                    aaCCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGCGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACctgctg                                                                                        >  8:187332/1‑149 (MQ=255)                                                         cagcagGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGgc                                                                                   >  1:202855/1‑149 (MQ=255)                                                                 cACGCCCTAGTGGCAACAATCGTTCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGa                                                                                                                                            <  7:158561/84‑1 (MQ=255)                                                                 cACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACctg                                                                                           >  7:98509/1‑133 (MQ=255)                                                                 cACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACctg                                                                                           <  8:98509/133‑1 (MQ=255)                                                                 aactgcatACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACgtgt                                                                           <  2:202855/142‑1 (MQ=255)                                                                                tcaaTAGATGTACACCG‑CATCGATCATCGAAGGCCTCACGCGCGCCA‑TGCGTCGTGAAGAACGCCACGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCAGAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTtct                                                            <  8:81354/148‑1 (MQ=255)                                                                                   aTCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGc                                                         <  1:123753/149‑1 (MQ=255)                                                                                             acCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTAACTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTgccg                                               >  8:150085/1‑149 (MQ=255)                                                                                               cg‑ccgcGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTgccgc                                              >  6:571/1‑148 (MQ=255)                                                                                                g‑ccgcGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCa                                            >  3:65170/1‑149 (MQ=255)                                                                                                  ccgcGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCAc                                           <  3:82493/149‑1 (MQ=255)                                                                                                       atcatcGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGa                                      <  2:92922/149‑1 (MQ=255)                                                                                                        tcatcGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAg                                     <  4:65170/149‑1 (MQ=255)                                                                                                             gAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCccg                                                                      >  5:10895/1‑111 (MQ=255)                                                                                                             gAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCccg                                                                      <  6:10895/111‑1 (MQ=255)                                                                                                              aaGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGCCCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAAc                               >  7:241211/1‑149 (MQ=255)                                                                                                              aaGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAAc                               <  1:53541/149‑1 (MQ=255)                                                                                                                ggCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAAccc                             <  2:60521/149‑1 (MQ=255)                                                                                                                      aCCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCAt                         <  1:146150/147‑1 (MQ=255)                                                                                                                        ccGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGa                     <  3:260739/149‑1 (MQ=255)                                                                                                                                    cTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTActgcacgaggcatggcgcgggtgaggccttcgatgatcgcggcggtgtagatctattgttgccagtattgagtataatgcttctgttggtctttgggtaggc          <  2:98196‑M2/149‑103 (MQ=255)                                                                                                                                     tCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTActgcacgaggaaatggcgcgggtgaggccttcgatgatcgcggcggtgtagatcgattgttgccagtagggcgtggcctgctgcggttggtctttgggtaggc         <  1:252180‑M2/149‑104 (MQ=255)                                                                                                                                     tCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTAtg         >  4:270330/1‑149 (MQ=255)                                                                                                                                     tCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTAtg         >  4:103233/1‑149 (MQ=255)                                                                                                                                       gtgtAGAACGCCCCTAGGCCGGGCTGACCTACCTGGCCGGTCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCAAGTGTTCACGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTAtgtg       <  7:290239/149‑1 (MQ=255)                                                                                                                                        tGCTGAACGCCCCGAGGCGGGGCTGACCTCCCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCTCATTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTgg      <  1:92860/149‑1 (MQ=255)                                                                                                                                         gCAGtagcccggccaggtaggtcagcccggcctcggggcgttctgcacgaggcatggcgcgggtgaggccttcgatgatcgcggcggtgtagatcgattgttgccagtagggcgtggcctgctgcggttggtctttgggtaggctcaag     <  1:60521‑M1/149‑146 (MQ=255)                                                                                                                                         gCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTActgcacgaggcatggcgcgggtgaggccttcgatgatcgcggcggtgtagatcgattgttgccagtagggcgtggcctgctgcggttg                        >  2:321163‑M2/1‑42 (MQ=255)                                                                                                                                         gCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTActgcacgaggcatggcgcgggtgaggccttcgatgatcgcggcggtgtagatcgattgttgccagtagggcgtggcctgctgcggttg                        <  1:321163‑M2/130‑89 (MQ=255)                                                                                                                                            gtagcccggccaggtaggtcagcccggcctcggggtgttctgcacgaggcatggcgcgggtgaggccttcgatgatcgcggcggtgtagatcgattgttgccagtagggcgtggcctgctgcggttggtctttgggtaggctcaaggtc  >  5:311324‑M1/1‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                     ACCTGGCCCTGGGCCTGGCGCTGGGCAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCG‑CCGCGATCATCGAAGGCCTCACCCGCGCCA‑TGCCTCGTGCAGAACGCCCCGAGGCCGGGCTGACCTACCTGGCCGGGCTACTGCACAACTTCGGCTACCTGCTGCTGGCGCACGTGTTCCCGCCGCACTTCTCGCTGATTTGCCGCCACCTTGAGGTCAACCCGCATTTGAACCACACCTATGTGGAGCA  >  NC_002947/6059754‑6060039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.