New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 437616	33 (0.630)	3 (0.060)	3/256	NT	7.8%	coding (744/1008 nt)	rdoA	serine/threonine protein kinase
	?	NC_002947	= 437674	39 (0.780)					coding (686/1008 nt)	rdoA	serine/threonine protein kinase

GGTCGTCCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGT  >  NC_002947/437468‑437762                                                                                                                                                     |                                                                                                                                                   ggTCGTCCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCG                                                                                                                                                    <  7:70864‑M1/149‑1 (MQ=255)  gtcgtcCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTcgc                                                                                                                                                   >  5:8831/1‑149 (MQ=255)   tcgtcCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTGGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTcgcg                                                                                                                                                  <  1:96909/149‑1 (MQ=255)   tcgtcCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTcgcg                                                                                                                                                  <  7:209437/149‑1 (MQ=255)      tcCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGtt                                                                                                                                               >  4:53174/1‑149 (MQ=255)         cAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGcc                                                                                                                                            >  4:87340/1‑149 (MQ=255)          aGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCg                                                                                                                                           <  1:249674/149‑1 (MQ=255)              ccTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCa                                                                                                                                       <  6:8831/149‑1 (MQ=255)                ttGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAg                                                                                                                                      >  3:194712/1‑148 (MQ=255)                           gcgcTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCcacat                                                                                                                          <  8:226652/149‑2 (MQ=255)                                 taGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCt                                                                                                                      <  6:194901/147‑1 (MQ=255)                                 taGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTg                                                                                                                    >  7:271595/1‑149 (MQ=255)                                    tGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAg                                                                                                                          <  4:84605/140‑1 (MQ=255)                                    tGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAg                                                                                                                          >  3:84605/1‑140 (MQ=255)                                            gcgcAGGGCGCGCAGTGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTggg                                                                                                          <  4:95445/148‑1 (MQ=255)                                            gcgcAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGc                                                                                                         <  3:85063/149‑1 (MQ=255)                                                              cTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTc                                                                                         <  8:237527‑M2/147‑2 (MQ=255)                                                                   tCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGacgattgccgcatgggcccagcggtgcaagacctgtggatgatgctggccggcaaccgcgaggagc                                                                                  <  2:11798‑M1/149‑67 (MQ=255)                                                                     aGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCATCGCGGTTGCCGTCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGAc                                                                                >  3:187318/1‑149 (MQ=255)                                                                       ggCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCa                                                                              >  5:272449/1‑149 (MQ=255)                                                                       ggCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCa                                                                              >  4:40758/1‑149 (MQ=255)                                                                        gCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCAc                                                                             >  2:165531/1‑149 (MQ=255)                                                                         ccAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGTCACTCCTCGCGGTTTCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACg                                                                            <  3:180405/149‑1 (MQ=255)                                                                           aGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTg                                                                          <  1:165531/149‑1 (MQ=255)                                                                               cgcgcgGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAACATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTa                                                                       <  3:53174/148‑1 (MQ=255)                                                                                gcgcgGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCCTCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTaca                                                                     >  7:142/1‑149 (MQ=255)                                                                                 cgcgGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGacgattgccgcatgggcccagcggtgcaagacctgtggatgatgctggccggcaaccgcga                                                                                       <  1:239858‑M1/130‑62 (MQ=255)                                                                                 cgcgGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGacgattgccgcatgggcccagcggtgaaagacctgtggatgatgctggccggcaaccgcga                                                                                       >  2:239858‑M1/1‑69 (MQ=255)                                                                                  gcgGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCCGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCCCGTGGTACAcc                                                                   >  6:182312/1‑149 (MQ=255)                                                                                           aGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCgg                                                          <  4:194712/149‑1 (MQ=255)                                                                                               gTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCa                                                      >  6:137788/1‑149 (MQ=255)                                                                                                 ggcaCTCGTTCTAGCCGTCGATCAGCTCGCCCAGTTGCCCCAGGCGCTCCTCGCGGGTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGGCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATc                                                    <  7:286606/146‑1 (MQ=255)                                                                                                      tCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGtt                                               >  1:178447/1‑149 (MQ=255)                                                                                                        gTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACATGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGc                                             >  4:241782/1‑149 (MQ=255)                                                                                                                         gCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCg                            >  6:201483/1‑149 (MQ=255)                                                                                                                          cTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGt                           >  3:84477/1‑149 (MQ=255)                                                                                                                               ccAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCggg                                         >  8:109356/1‑130 (MQ=255)                                                                                                                               ccAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCggg                                         <  7:109356/130‑1 (MQ=255)                                                                                                                                     gCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGAt                 >  6:156216/1‑148 (MQ=255)                                                                                                                                     gCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGAt                 <  7:237527/148‑1 (MQ=255)                                                                                                                                       cccAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAg              >  6:47041/1‑149 (MQ=255)                                                                                                                                        ccAGGCGCTCCTCGCGGTTGCCGGCCAGCAACATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGc             >  3:161756/1‑149 (MQ=255)                                                                                                                                              gcTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTcgaggagcgcctggggcaactggccgagctgatcgacggctacaacgagttccacgacttcgacccgcgcgaactggccctga       <  2:11798‑M2/149‑84 (MQ=255)                                                                                                                                                  ctcGGGGTTGGCGGCGAGCTTGTTGCTGAGGTCTTGCACCGCTGGGCCCTTGGGGCAATCGTGGAGGTCGACCTCGTGGGACAGGTCATGGCGGTGCTTCAGGTTGGCGGGGTGCAGGTGGGGGTGGAGGGGGATGAGCtggtgtggt    <  4:161756/148‑1 (MQ=255)                                                                                                                                                   tcGCGGTTGCCGGCCAGCATCATCCACAGGTCTTTCACCGCTGGGCCCATGCGGCAATCGTcgaggagcgcctggggcaactggccgagctgatcgacggctacaacgagttccacgacttcgacccgcg                     >  2:239858‑M2/1‑61 (MQ=255)                                                                                                                                                   tcGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTcgaggagcgcctggggcaactggccgagctgatcgacggctacaacgagttccacgacttcgacccgcg                     <  1:239858‑M2/130‑70 (MQ=255)                                                                                                                                                     gcgGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGGAGGTCGCCGTGCAGGCGGATGAGCTggtgtggtgt  <  6:272449/147‑1 (MQ=255)                                                                                                                                                     gacgattgccgcatgggcccagcggtgcaagacctgtggatgatgctggccggcaaccgcgaggagcgcctggggcaactggccgagctgatcgacggctacaacgagttccacgacttcgacccgcgcgaactggccctgatcgag  <  8:237527‑M1/147‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GGTCGTCCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGT  >  NC_002947/437468‑437762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.