New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 437616	33 (0.630)	3 (0.060)	3/256	NT	7.8%	coding (744/1008 nt)	rdoA	serine/threonine protein kinase
	?	NC_002947	= 437674	39 (0.780)					coding (686/1008 nt)	rdoA	serine/threonine protein kinase

CTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACGGACTCGAACGCC  >  NC_002947/437529‑437820                                                                                                                                                  |                                                                                                                                                   cTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTc                                                                                                                                                   <  8:237527‑M2/147‑2 (MQ=255)        aGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCATCGCGGTTGCCGTCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGAc                                                                                                                                          >  3:187318/1‑149 (MQ=255)          ggCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCa                                                                                                                                        >  5:272449/1‑149 (MQ=255)          ggCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCa                                                                                                                                        >  4:40758/1‑149 (MQ=255)           gCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCAc                                                                                                                                       >  2:165531/1‑149 (MQ=255)            ccAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGTCACTCCTCGCGGTTTCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACg                                                                                                                                      <  3:180405/149‑1 (MQ=255)              aGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTg                                                                                                                                    <  1:165531/149‑1 (MQ=255)                  cgcgcgGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAACATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTa                                                                                                                                 <  3:53174/148‑1 (MQ=255)                   gcgcgGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCCTCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTaca                                                                                                                               >  7:142/1‑149 (MQ=255)                     gcgGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCCGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCCCGTGGTACAcc                                                                                                                             >  6:182312/1‑149 (MQ=255)                              aGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCgg                                                                                                                    <  4:194712/149‑1 (MQ=255)                                  gTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCa                                                                                                                >  6:137788/1‑149 (MQ=255)                                    ggcaCTCGTTCTAGCCGTCGATCAGCTCGCCCAGTTGCCCCAGGCGCTCCTCGCGGGTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGGCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATc                                                                                                              <  7:286606/146‑1 (MQ=255)                                         tCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGtt                                                                                                         >  1:178447/1‑149 (MQ=255)                                           gTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACATGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGc                                                                                                       >  4:241782/1‑149 (MQ=255)                                                            gCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCg                                                                                      >  6:201483/1‑149 (MQ=255)                                                             cTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGt                                                                                     >  3:84477/1‑149 (MQ=255)                                                                  ccAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCggg                                                                                                   <  7:109356/130‑1 (MQ=255)                                                                  ccAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCggg                                                                                                   >  8:109356/1‑130 (MQ=255)                                                                        gCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGAt                                                                           <  7:237527/148‑1 (MQ=255)                                                                        gCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGAt                                                                           >  6:156216/1‑148 (MQ=255)                                                                          cccAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAg                                                                        >  6:47041/1‑149 (MQ=255)                                                                           ccAGGCGCTCCTCGCGGTTGCCGGCCAGCAACATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGc                                                                       >  3:161756/1‑149 (MQ=255)                                                                                 gcTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTcgaggagcgcctggggcaactggccgagctgatcgacggctacaacgagttccacgacttcgacccgcgcgaactggccctga                                                                 <  2:11798‑M2/149‑84 (MQ=255)                                                                                     ctcGGGGTTGGCGGCGAGCTTGTTGCTGAGGTCTTGCACCGCTGGGCCCTTGGGGCAATCGTGGAGGTCGACCTCGTGGGACAGGTCATGGCGGTGCTTCAGGTTGGCGGGGTGCAGGTGGGGGTGGAGGGGGATGAGCtggtgtggt                                                              <  4:161756/148‑1 (MQ=255)                                                                                      tcGCGGTTGCCGGCCAGCATCATCCACAGGTCTTTCACCGCTGGGCCCATGCGGCAATCGTcgaggagcgcctggggcaactggccgagctgatcgacggctacaacgagttccacgacttcgacccgcg                                                                               >  2:239858‑M2/1‑61 (MQ=255)                                                                                      tcGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTcgaggagcgcctggggcaactggccgagctgatcgacggctacaacgagttccacgacttcgacccgcg                                                                               <  1:239858‑M2/130‑70 (MQ=255)                                                                                        gcgGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGGAGGTCGCCGTGCAGGCGGATGAGCTggtgtggtgt                                                            <  6:272449/147‑1 (MQ=255)                                                                                          ggTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACAGCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGa                                                        <  5:156216/149‑1 (MQ=255)                                                                                              gCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCg                                                     <  4:84477/148‑1 (MQ=255)                                                                                                cGGCCAGCATCAGCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAg                                                  <  8:271595/149‑1 (MQ=255)                                                                                                             ccACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCAccc                                     >  5:62565/1‑149 (MQ=255)                                                                                                              cacaGGTCTTGCACCGCTGGGCCCATGCGGCAATCGGCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCAccc                                     <  8:142/148‑1 (MQ=255)                                                                                                               acaGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGc                                   >  2:261388/1‑149 (MQ=255)                                                                                                                 aGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTTGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCtt                                 <  1:261388/149‑1 (MQ=255)                                                                                                                   gTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCtt                                 >  5:48494/1‑147 (MQ=255)                                                                                                                          aCCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTggtgtggtgt                                                            >  5:241023/1‑113 (MQ=255)                                                                                                                          aCCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTggtgtggtgt                                                            <  6:241023/113‑1 (MQ=255)                                                                                                                          aCCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAg                              >  5:314492/1‑143 (MQ=255)                                                                                                                          aCCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAg                              >  4:209512/1‑143 (MQ=255)                                                                                                                              cTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCgg                    <  5:201483/149‑1 (MQ=255)                                                                                                                                    ccATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACg              >  3:312721/1‑149 (MQ=255)                                                                                                                                    ccATGCGGCAATCGTCGAGGACGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGCATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACg              >  5:286442/1‑149 (MQ=255)                                                                                                                                         cGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCGGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACGGACt          <  3:40758/148‑1 (MQ=255)                                                                                                                                                 gtcgAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTTTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACGGACTCGAACGcc  <  3:87340/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACGGACTCGAACGCC  >  NC_002947/437529‑437820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.