New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3271705 =	36 (0.690)	4 (0.080)	4/252	NT	10.2%	coding (380/1953 nt)	PP_2869	FMN‑binding oxidoreductase
	?	NC_002947	3271743 =	36 (0.730)					coding (342/1953 nt)	PP_2869	FMN‑binding oxidoreductase

GTAGCCATGGCTGGCCACCACCTCGACGCCATCCAGGCCGGCCTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGG  >  NC_002947/3271560‑3271843                                                                                                                                                   |                                                                                                                                           gTAGCCATGGCTGGCCACCACCTCGACGCCATCCAGGCCGGCCTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCg                                                                                                                                            >  2:1519/1‑146 (MQ=255)  cagtgcccgctacacctcgcatgtgctaatggccactgacgatgcctgcatcgacggctaccgccagcttgccgaggcctgccatgcgcacggcaccgtggtgctgtcgcaactgtttcaccctgggcgggagatcatggagtcgGCAg                                                                                                                                         >  2:229340‑M1/146‑149 (MQ=255)    gCCATGGCTGGCCACCACCTCGACGCCATCCAGGCCGGCCTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCATCTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGAc                                                                                                                                       <  1:89556/149‑1 (MQ=255)     tgcccgctacacctcgcatgtgctaatggccactgacgatgcctgcatcgacggctaccgccagcttgccgaggcctgccatgcgcacggcaccgtggtgctgtcgcaactgtttcaccctgggcgggagatcatggagtcgGCAGACg                                                                                                                                      <  4:204881‑M1/7‑1 (MQ=255)          gctggcCACCACCTCGACGCCATCCAGGCCGGCCTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGt                                                                                                                                <  1:221621/149‑1 (MQ=255)            tggcCACCACCTCGACGCCATCCAGGCCGGCCTGGTACAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGCGTAg                                                                                                                              >  3:170645/1‑149 (MQ=255)              gcCACCACCTCGACGCCATCCAGGCCGGCCTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGc                                                                                                                            >  2:35017/1‑149 (MQ=255)                caccacCTCGACGCCATCCAGGCCGGCCTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTa                                                                                                                          >  7:171750/1‑149 (MQ=255)                 accaccTCGACGCCATCCAGGCCGGCCTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTAc                                                                                                                         <  4:184572/149‑1 (MQ=255)                                  cAGGCCGGCCTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCt                                                                                                         <  1:35017/148‑1 (MQ=255)                                    ggccggccTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGcc                                                                                                      >  4:53024/1‑149 (MQ=255)                                    ggccggccTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGcc                                                                                                      >  7:256781/1‑149 (MQ=255)                                    actgacgatgcctgcatcgacggctaccgccagcttgccgaggcctgccatgcgcacggcaccgtggtgctgtcgcaactgtttcaccctgggcgggagatcatggagtcgGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGc                                                                                                       >  5:148114‑M1/112‑149 (MQ=255)                                         gccTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTc                                                                                                 <  3:53024/149‑1 (MQ=255)                                              gTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGa                                                                                            <  8:256250/149‑1 (MQ=255)                                               tccAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGAt                                                                                           <  5:282786/147‑1 (MQ=255)                                               ctgcatcgacggctaccgccagcttgccgaggcctgccatgcgcacggcaccgtggtgctgtcgcaactgtttcaccctgggcgggagatcatggagtcgGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGcc                                                                                                      >  5:260416‑M1/101‑139 (MQ=255)                                               ctgcatcgacggctaccgccagcttgccgaggcctgccatgcgcacggcaccgtggtgctgtcgcaactgtttcaccctgggcgggagatcatggagtcgGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGcc                                                                                                      <  6:260416‑M1/39‑1 (MQ=255)                                                  aGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGAtctc                                                                                        <  1:1519/149‑1 (MQ=255)                                                          ggcggcgCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAg                                                                                >  6:186587/1‑149 (MQ=255)                                                              gcgcTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCAATGATCTCCCGCCCAGGGt                                                                             >  4:6453/1‑148 (MQ=255)                                                                ccgccagcttgccgaggcctgccatgcgcacggcaccgtggtgctgtcgcaactgtttcacccggaagcgctcattgggcaccGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGa                                                                           >  7:119052‑M1/84‑149 (MQ=255)                                                                         gCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGc                                                                  <  8:256781/148‑1 (MQ=255)                                                                             tGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAg                                                             >  4:95232/1‑149 (MQ=255)                                                                               gACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGca                                                           >  5:43259/1‑149 (MQ=255)                                                                               gACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGca                                                           >  1:201215/1‑149 (MQ=255)                                                                                aCGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGcac                                                          <  2:24349/149‑1 (MQ=255)                                                                                 cGATTTCGTCGATCAT‑TGCCTGGGCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGcacc                                                         <  1:152788/149‑1 (MQ=255)                                                                                     ttCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACgg                                                     >  8:31991/1‑149 (MQ=255)                                                                                                    ccTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATgg                                       >  4:71998/1‑149 (MQ=255)                                                                                                    ccTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATgg                                       >  4:172413/1‑149 (MQ=255)                                                                                                        gTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAg                                    <  8:171750/148‑1 (MQ=255)                                                                                                         tCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCTATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGc                                  <  3:6453/149‑1 (MQ=255)                                                                                                                cccGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGc                            >  3:83379/1‑148 (MQ=255)                                                                                                                        aTCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCg                   <  3:95232/149‑1 (MQ=255)                                                                                                                            cccGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTg                      >  5:190485/1‑142 (MQ=255)                                                                                                                            cccGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTg                      <  6:190485/142‑1 (MQ=255)                                                                                                                            cccGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAg               <  5:186587/149‑1 (MQ=255)                                                                                                                                gAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGc                    <  4:167595/140‑1 (MQ=255)                                                                                                                                gAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGc                    >  3:167595/1‑140 (MQ=255)                                                                                                                                         aTTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAgg  >  6:266561/1‑149 (MQ=255)                                                                                                                                          ttGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTcc                                                                                                >  2:241042/1‑54 (MQ=255)                                                                                                                                          ttGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTcc                                                                                                <  1:241042/54‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                           GTAGCCATGGCTGGCCACCACCTCGACGCCATCCAGGCCGGCCTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCAT‑TGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCGACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGG  >  NC_002947/3271560‑3271843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.