New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3271705 =	36 (0.690)	4 (0.080)	4/252	NT	10.2%	coding (380/1953 nt)	PP_2869	FMN‑binding oxidoreductase
	?	NC_002947	3271743 =	36 (0.730)					coding (342/1953 nt)	PP_2869	FMN‑binding oxidoreductase

GGCCGGCCTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTAGCACATGCGAGGTGTAGCGGGCACTG  >  NC_002947/3271595‑3271887                                                                                                                                                     |                                                                                                                                                  ggccggccTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGcc                                                                                                                                                   >  4:53024/1‑149 (MQ=255) ggccggccTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGcc                                                                                                                                                   >  7:256781/1‑149 (MQ=255)      gccTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTc                                                                                                                                             <  3:53024/149‑1 (MQ=255)           gTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGa                                                                                                                                        <  8:256250/149‑1 (MQ=255)           ctgcatcgacggctaccgccagcttgccgaggcctgccatgcgcacggcaccgtggtgctgtcgcaactgtttcaccctgggcgggagatcatggagtcgGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGcc                                                                                                                                                   >  5:260416‑M1/101‑139 (MQ=255)           ctgcatcgacggctaccgccagcttgccgaggcctgccatgcgcacggcaccgtggtgctgtcgcaactgtttcaccctgggcgggagatcatggagtcgGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGcc                                                                                                                                                   <  6:260416‑M1/39‑1 (MQ=255)            tccAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGAt                                                                                                                                       <  5:282786/147‑1 (MQ=255)               aGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGAtctc                                                                                                                                    <  1:1519/149‑1 (MQ=255)                       ggcggcgCTGGCGTAGCCCTGGACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAg                                                                                                                            >  6:186587/1‑149 (MQ=255)                           gcgcTGGCGTAGCCCTGGACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCAATGATCTCCCGCCCAGGGt                                                                                                                         >  4:6453/1‑148 (MQ=255)                            ccgccagcttgccgaggcctgccatgcgcacggcaccgtggtgctgtcgcaactgtttcacccggaagcgctcattgggcaccGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGa                                                                                                                       >  7:119052‑M1/84‑149 (MQ=255)                                      gCCCTGGACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGc                                                                                                              <  8:256781/148‑1 (MQ=255)                                          tGGACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAg                                                                                                         >  4:95232/1‑149 (MQ=255)                                            gACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGca                                                                                                       >  5:43259/1‑149 (MQ=255)                                            gACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGca                                                                                                       >  1:201215/1‑149 (MQ=255)                                             aCGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGcac                                                                                                      <  2:24349/149‑1 (MQ=255)                                              cGATTTCGTCGATCATTGCCTGGGCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGcacc                                                                                                     <  1:152788/149‑1 (MQ=255)                                                  ttCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACgg                                                                                                 >  8:31991/1‑149 (MQ=255)                                                                ccTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATgg                                                                                   >  4:71998/1‑149 (MQ=255)                                                                ccTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATgg                                                                                   >  4:172413/1‑149 (MQ=255)                                                                    gTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAg                                                                                <  8:171750/148‑1 (MQ=255)                                                                     tCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCTATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGc                                                                              <  3:6453/149‑1 (MQ=255)                                                                            cccGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGc                                                                        >  3:83379/1‑148 (MQ=255)                                                                                   tcaccctgggcgggagatcatggagtcggcagacggcctgttggcggtagcctactcggcgtctgcGGTGCCCAATGA‑‑GCGCTTCC‑GGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCgg                                                              >  7:119052‑M2/67‑149 (MQ=255)                                                                                    aTCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCg                                                               <  3:95232/149‑1 (MQ=255)                                                                                        cccGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTg                                                                  >  5:190485/1‑142 (MQ=255)                                                                                        cccGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTg                                                                  <  6:190485/142‑1 (MQ=255)                                                                                        cccGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAg                                                           <  5:186587/149‑1 (MQ=255)                                                                                            gAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGc                                                                >  3:167595/1‑140 (MQ=255)                                                                                            gAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGc                                                                <  4:167595/140‑1 (MQ=255)                                                                                                     aTTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAgg                                              >  6:266561/1‑149 (MQ=255)                                                                                                      ttGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTcc                                                                                                                                            <  1:241042/54‑1 (MQ=255)                                                                                                      ttGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTcc                                                                                                                                            >  2:241042/1‑54 (MQ=255)                                                                                                              ggcagacggcctgttggcggtagcctactcggcgtctgcCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAg                                               <  6:260416‑M2/100‑1 (MQ=255)                                                                                                              ggcagacggcctgttggcggtagcctactcggcgtctgcCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAg                                               >  5:260416‑M2/40‑139 (MQ=255)                                                                                                               gcagacggcctgttggcggtagcctactcggcgtctgcCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGt                                    >  5:148114‑M2/39‑149 (MQ=255)                                                                                                                CAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTg                                   >  3:71998‑M1/1‑149 (MQ=255)                                                                                                                     GCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTc                                       <  6:120867‑M1/140‑1 (MQ=255)                                                                                                                     GCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTc                                       >  5:120867‑M1/1‑140 (MQ=255)                                                                                                                       cGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCAt                              >  7:27822/1‑147 (MQ=255)                                                                                                                       cGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTa                            <  6:43259/149‑1 (MQ=255)                                                                                                                             ggCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTAGCACAt                      >  5:290491/1‑149 (MQ=255)                                                                                                                             ggCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTAGCACAt                      <  5:266561/149‑1 (MQ=255)                                                                                                                              gCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTAGCACATg                     >  4:244312/1‑149 (MQ=255)                                                                                                                                 aCCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTAGCACATGCGa                  <  6:290491/149‑1 (MQ=255)                                                                                                                                  ccGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTAGCACATGCGAg                 <  8:27822/149‑1 (MQ=255)                                                                                                                                   cGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTAGCACATGCGAgg                >  7:213889/1‑149 (MQ=255)                                                                                                                                     ccAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTAGCACATGCGAGgtg              >  4:296758/1‑149 (MQ=255)                                                                                                                                           ggCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTAGCACATGCGAGGTGTAGCgg        <  4:83379/149‑1 (MQ=255)                                                                                                                                              cgtctgcCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTAGCACATGCGAGGTGTAGCGGGCa     <  4:204881‑M2/142‑1 (MQ=255)                                                                                                                                                 ctgcCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTAGCACATGCGAGGTGTAGCGGGCACTg  >  2:229340‑M2/5‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GGCCGGCCTGGTGCAGGCGGCGGGCGGCGCTGGCGTAGCCCTGGACGATTTCGTCGATCATTGCCTGGTCCAGCGCCCGTGGCATCACCCGGAAGCGCTCATTGGGCACCGCAGACGCCGAGTAGGCTACCGCCAACAGGCCGTCTGCCG‑ACTCCATGATCTCCCGCCCAGGGTGAAACAGTTGCGACAGCACCACGGTGCCGTGCGCATGGCAGGCCTCGGCAAGCTGGCGGTAGCCGTCGATGCAGGCATCGTCAGTGGCCATTAGCACATGCGAGGTGTAGCGGGCACTG  >  NC_002947/3271595‑3271887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.