New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3310078	31 (0.600)	4 (0.080)	4/244	NT	11.7%	coding (1193/1251 nt)	lhgO	L‑2‑hydroxyglutarate oxidase
	?	NC_002947	= 3310098	32 (0.670)					coding (1213/1251 nt)	lhgO	L‑2‑hydroxyglutarate oxidase

GTGTCGCGCGACGGCAAGCTGATCGACGATTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCT  >  NC_002947/3309930‑3310224                                                                                                                                                     |                                                                                                                                                   gtgtCGCGCGACGGCAAGCTGATCGACGATTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCT                                                                                                                                                    >  6:115822‑M1/1‑149 (MQ=255)  tgtCGCGCGACGGCAAGCTGATCGACGATTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGGCGGCCTg                                                                                                                                                   <  1:242352/149‑1 (MQ=255)       cgcgACGGCAAGCTGATCGACGATTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAggg                                                                                                                                              <  5:115822/149‑1 (MQ=255)       cgcgACGGCAAGCTGATCGACGATTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAggg                                                                                                                                              <  2:46445/149‑1 (MQ=255)         cgACGGCAAGCTGATCGACGATTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGggcg                                                                                                                                            <  4:217988/149‑1 (MQ=255)          gACGGCAAGCTGATCGACGATTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGggcgg                                                                                                                                           >  4:10420/1‑149 (MQ=255)                  gCTGATCGACGATTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGTTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTcc                                                                                                                                   <  8:185157/149‑1 (MQ=255)                             aTTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAaggccgac                                                                                                                        >  2:25869‑M2/1‑141 (MQ=255)                             aTTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAaggccgac                                                                                                                        >  6:120158‑M2/1‑141 (MQ=255)                                        gTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGggcggc                                                                                                                                          <  5:159541/120‑1 (MQ=255)                                        gTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGggcggc                                                                                                                                          >  6:159541/1‑120 (MQ=255)                                           aaCACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTtggggaagctgccgccctgcaggccgac                                                                                                                        >  5:245662‑M1/1‑107 (MQ=255)                                           aaCACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTtggggaagctgccgccctgcaggccgac                                                                                                                        <  6:245662‑M1/135‑29 (MQ=255)                                           aaCACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAAc                                                                                                            >  4:172433/1‑147 (MQ=255)                                             cacCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGATGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCaga                                                                                                        <  2:310340/149‑1 (MQ=255)                                                  cacgcaGTGTCAACGTGTGCAACGCTCCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCt                                                                                                   <  3:10420/149‑1 (MQ=255)                                                      caGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCa                                                                                               <  6:269853/149‑1 (MQ=255)                                                         tgtCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTtggggaagctgccgccctgcaggccgacctgctc                                                                                                                  <  1:190781‑M1/127‑35 (MQ=255)                                                         tgtCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTtggggaagctgccgccctgcaggccgacctgctc                                                                                                                  >  2:190781‑M1/1‑93 (MQ=255)                                                              aCGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAg                                                                                       >  1:165847/1‑149 (MQ=255)                                                                             cGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCtgc                                                                        <  3:255586/149‑3 (MQ=255)                                                                                 gCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCg                                                                    >  5:24488/1‑149 (MQ=255)                                                                                           aCCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGttt                                                           >  7:29094/1‑148 (MQ=255)                                                                                             cTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTAc                                                        <  8:29094/149‑1 (MQ=255)                                                                                              tCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCgg                                                                   >  5:168280/1‑137 (MQ=255)                                                                                              tCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCgg                                                                   <  6:168280/137‑1 (MQ=255)                                                                                              tCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACt                                                       >  7:303573/1‑149 (MQ=255)                                                                                                           tCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGc                                          <  2:165847/149‑1 (MQ=255)                                                                                                              gcgcCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCGACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCt                                       >  6:71996/1‑149 (MQ=255)                                                                                                               cgcCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCt                                       >  8:263077/1‑148 (MQ=255)                                                                                                               cgcCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTg                                      <  6:24488/149‑1 (MQ=255)                                                                                                                   tACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCa                                  >  8:83001/1‑149 (MQ=255)                                                                                                                          tcgAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCAtt                             >  7:194737/1‑147 (MQ=255)                                                                                                                          tcgAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCAtt                             >  4:246468/1‑147 (MQ=255)                                                                                                                            gagaAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCg                                                              <  3:12462/112‑1 (MQ=255)                                                                                                                            gagaAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCg                                                              >  4:12462/1‑112 (MQ=255)                                                                                                                                  gtgtGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTcagggcaggg                   >  2:165623/1‑149 (MQ=255)                                                                                                                                        gAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAaggccgacctgctcgcacaccttctcgacgatgtaggcgccgatcgggatggccgaggtagcagctggcgacggtgcgttgcacacgttgaca                                   >  2:190781‑M2/1‑34 (MQ=255)                                                                                                                                        gAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAaggccgacctgctcgcacaccttctcgacgatgtaggcgccgatcgggatggccgaggtagcagctggcgacggtgcgttgcacacgttgaca                                   <  1:190781‑M2/127‑94 (MQ=255)                                                                                                                                              gTCGGCCTtggggaagctgccgccctgcaggccgacctgctcgcacaccttctcgacgatgtaggcgccgatcgggatggccgaggtagcagctggcgacggtgcgttgcacacgttgacactgcgtgcggtgttgacgaacaggaaat       >  6:120158‑M1/1‑8 (MQ=255)                                                                                                                                              gTCGGCCTtggggaagctgccgccctgcaggccgacctgctcgcacaccttctcgacgatgtaggcgccgatcgggatggccgaggtagcagctggcgacggtgcgttgcacacgttgacactgcgtgcggtgttgacgaacaggaaat       >  2:25869‑M1/1‑8 (MQ=255)                                                                                                                                              gTCGGCCTGCAGGGCGGCAGCTTCCCCAaggccgacctgctcgcacaccttctcgacgatgtaggcgccgatcgggatggccgaggtagcagctggcgacggtgcgttgcacacgttgacactgcgtgcggtgtt                     >  5:245662‑M2/1‑28 (MQ=255)                                                                                                                                              gTCGGCCTGCAGGGCGGCAGCTTCCCCAaggccgacctgctcgcacaccttctcgacgatgtaggcgccgatcgggatggccgaggtagcagctggcgacggtgcgttgcacacgttgacactgcgtgcggtgtt                     <  6:245662‑M2/135‑108 (MQ=255)                                                                                                                                              gTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTcg       >  8:288312/1‑149 (MQ=255)                                                                                                                                              gTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTcg       >  3:343/1‑149 (MQ=255)                                                                                                                                                   ccTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCt  <  4:343/149‑1 (MQ=255)                                                                                                                                                     tGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTAc                                                        >  6:12910/1‑93 (MQ=255)                                                                                                                                                     tGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTAc                                                        <  5:12910/93‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GTGTCGCGCGACGGCAAGCTGATCGACGATTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCT  >  NC_002947/3309930‑3310224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.