New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3310078	31 (0.600)	4 (0.080)	4/244	NT	11.7%	coding (1193/1251 nt)	lhgO	L‑2‑hydroxyglutarate oxidase
	?	NC_002947	= 3310098	32 (0.670)					coding (1213/1251 nt)	lhgO	L‑2‑hydroxyglutarate oxidase

ATTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCTGCGTCGGTGACGTGCAGCCG  >  NC_002947/3309958‑3310244                                                                                                                                             |                                                                                                                                                   aTTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAaggccgac                                                                                                                                            >  6:120158‑M2/1‑141 (MQ=255) aTTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAaggccgac                                                                                                                                            >  2:25869‑M2/1‑141 (MQ=255)               aaCACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAAc                                                                                                                                >  4:172433/1‑147 (MQ=255)                 cacCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGATGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCaga                                                                                                                            <  2:310340/149‑1 (MQ=255)                      cacgcaGTGTCAACGTGTGCAACGCTCCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCt                                                                                                                       <  3:10420/149‑1 (MQ=255)                          caGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCa                                                                                                                   <  6:269853/149‑1 (MQ=255)                                  aCGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAg                                                                                                           >  1:165847/1‑149 (MQ=255)                                                 cGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCtgc                                                                                            <  3:255586/149‑3 (MQ=255)                                                     gCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCg                                                                                        >  5:24488/1‑149 (MQ=255)                                                               aCCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGttt                                                                               >  7:29094/1‑148 (MQ=255)                                                                 cTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTAc                                                                            <  8:29094/149‑1 (MQ=255)                                                                  tCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCgg                                                                                       <  6:168280/137‑1 (MQ=255)                                                                  tCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCgg                                                                                       >  5:168280/1‑137 (MQ=255)                                                                  tCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACt                                                                           >  7:303573/1‑149 (MQ=255)                                                                               tCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGc                                                              <  2:165847/149‑1 (MQ=255)                                                                                  gcgcCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCGACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCt                                                           >  6:71996/1‑149 (MQ=255)                                                                                   cgcCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCt                                                           >  8:263077/1‑148 (MQ=255)                                                                                   cgcCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTg                                                          <  6:24488/149‑1 (MQ=255)                                                                                       tACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCa                                                      >  8:83001/1‑149 (MQ=255)                                                                                              tcgAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCAtt                                                 >  4:246468/1‑147 (MQ=255)                                                                                              tcgAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCAtt                                                 >  7:194737/1‑147 (MQ=255)                                                                                                gagaAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCg                                                                                  <  3:12462/112‑1 (MQ=255)                                                                                                gagaAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCg                                                                                  >  4:12462/1‑112 (MQ=255)                                                                                                      gtgtGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTcagggcaggg                                       >  2:165623/1‑149 (MQ=255)                                                                                                            gAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAaggccgacctgctcgcacaccttctcgacgatgtaggcgccgatcgggatggccgaggtagcagctggcgacggtgcgttgcacacgttgaca                                                       <  1:190781‑M2/127‑94 (MQ=255)                                                                                                            gAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAaggccgacctgctcgcacaccttctcgacgatgtaggcgccgatcgggatggccgaggtagcagctggcgacggtgcgttgcacacgttgaca                                                       >  2:190781‑M2/1‑34 (MQ=255)                                                                                                                  gTCGGCCTGCAGGGCGGCAGCTTCCCCAaggccgacctgctcgcacaccttctcgacgatgtaggcgccgatcgggatggccgaggtagcagctggcgacggtgcgttgcacacgttgacactgcgtgcggtgtt                                         >  5:245662‑M2/1‑28 (MQ=255)                                                                                                                  gTCGGCCTGCAGGGCGGCAGCTTCCCCAaggccgacctgctcgcacaccttctcgacgatgtaggcgccgatcgggatggccgaggtagcagctggcgacggtgcgttgcacacgttgacactgcgtgcggtgtt                                         <  6:245662‑M2/135‑108 (MQ=255)                                                                                                                  gTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTcg                           >  3:343/1‑149 (MQ=255)                                                                                                                  gTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTcg                           >  8:288312/1‑149 (MQ=255)                                                                                                                       ccTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCt                      <  4:343/149‑1 (MQ=255)                                                                                                                         tGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTAc                                                                            >  6:12910/1‑93 (MQ=255)                                                                                                                         tGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTAc                                                                            <  5:12910/93‑1 (MQ=255)                                                                                                                              ggcggcAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCTGCGTCgg               <  1:165623/149‑1 (MQ=255)                                                                                                                               gcggcAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCTGCGTCGGt              <  7:263077/149‑1 (MQ=255)                                                                                                                                  gcAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCTGCGTCGGTGAc           <  7:288312/149‑1 (MQ=255)                                                                                                                                  gcAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCTGCGTCGGTGAc           >  6:114138/1‑149 (MQ=255)                                                                                                                                      cTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCTGCGTCGGTGACGTGc       <  7:83001/149‑1 (MQ=255)                                                                                                                                          cccAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCTGCGTCGGTGACGTGCAGcc   >  3:145741/1‑149 (MQ=255)                                                                                                                                           ccAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCTGCGTCGGTGACGTGCAGCcg  >  7:253637/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                   ATTTCCTGTTCGTCAACACCGCACGCAGTGTCAACGTGTGCAACGCACCGTCGCCAGCTGCTACCTCGGCCATCCCGATCGGCGCCTACATCGTCGAGAAGGTGTGCGAGCAGGTCGGCCTGCAGGGCGGCAGCTTCCCCAAGGCCGACCTGTCGGCCAACCAGAGGGCTGCCAGCTGACAGCCGGGTAACACCTTCTGCGGTTTCGTTTTACTCAACCCGTACTGCCCTGCTCACCATTCAGGGCAGGGCGGGCTTTTTCGCGCCTGCGTCGGTGACGTGCAGCCG  >  NC_002947/3309958‑3310244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.