New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3485232	33 (0.630)	3 (0.060)	3/256	NT	7.8%	coding (692/3804 nt)	PP_3091	membrane protein
	?	NC_002947	= 3485268	39 (0.780)					coding (656/3804 nt)	PP_3091	membrane protein

AAAGGTCATGCCCAGCGGCTGCTGGCGTTCGTGCAGGTCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATT  >  NC_002947/3485084‑3485379                                                                                                                                                     |                                                                                                                                                        aaaGGTCATGCCCAGCGGCTGCTGGCGTTCGTGCAGGTCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCA                                                                                                                                                         >  4:298702‑M1/1‑149 (MQ=255)     gTCATGCCCAGCGGCTGCTGGCGTTCGTGCAGGTCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAg                                                                                                                                                     <  2:325988/149‑1 (MQ=255)            ccAGCGGCTGCTGGCGTTCGTGCAGGTCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTCGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGCTTGGCATCGAGGCATTCGGCGTATTCATCCACCCGCGCCACCAGCTGGCCa                                                                                                                                              >  6:100502/1‑149 (MQ=255)             cAGCGGCTGCTGGCGTTCGTGCAGGTCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAg                                                                                                                                             >  1:282185/1‑149 (MQ=255)              aGCGGCTGCTGGCGTTCGTGCAGGTCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAAATGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTACACCCGGGACACCAGCTGGGCAGc                                                                                                                                            >  5:175189/1‑149 (MQ=255)                  gctgctGGCGTTCGTGCAGGTCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAgg                                                                                                                                        <  5:239324/149‑1 (MQ=255)                      ctgGCGTTCGTGCAGGTCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCTGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGc                                                                                                                                      <  1:152321/147‑1 (MQ=255)                         gCGTTCGTGCAGGTCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCATCCAGGGCATTg                                                                                                                                  <  4:24535/148‑1 (MQ=255)                              cgggCAGGTCGAGGCCGTCGAAAGCCTGGATGAAGCCCTGCAACTTGTCGGTCTTGCGCAGCATCAGGTAAACAGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTc                                                                                                                             <  3:194592/145‑1 (MQ=255)                               gTGCAGGTCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCAt                                                                                                                           >  3:317916/1‑149 (MQ=255)                                   aGGTCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCt                                                                                                                       <  3:122155/149‑1 (MQ=255)                                      tCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTt                                                                                                                    >  3:298702‑M2/1‑148 (MQ=255)                                         aGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTtggc                                                                                                                 <  8:301853‑M2/149‑5 (MQ=255)                                             cGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCAacagcgatgagcgcaatgccctggctgcccagctggtggcccgg                                                                                                             <  2:320185‑M1/149‑45 (MQ=255)                                                 gAATGCCTGGCTGAAGCGCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCTTTCGGGGTATTCTTCCACCCGGGGCACCAGCTGGTCAGCCAGGGCATTGCGCTCTTCGCTGTTG‑‑‑GCCGCcagca                                                                                                      <  6:175189/149‑1 (MQ=255)                                                  gttgCCGGGCTTCAGCCAGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTAG‑‑‑GCCGCcagcag                                                                                                     >  4:197095/4‑149 (MQ=255)                                                   aaGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGt                                                                                                    >  3:16414/1‑149 (MQ=255)                                                      ccTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCAacagcgatgagcgcaatgccctggctgcccagctggtggcccggg                                                                                                            <  7:191046‑M1/141‑46 (MQ=255)                                                      ccTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCAacagcgatgagcgcaatgccctggctgcccagctggtggcccggg                                                                                                            >  8:191046‑M1/1‑96 (MQ=255)                                                              aaGCCCGGCAACTGGTCGGTCTTGCTCATCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑t                                                                                        <  7:50494/149‑1 (MQ=255)                                                              aaGCCCGGCAACTGGTCGGTCTTGCTCAGCATCATGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAgg                                                                                           <  2:282185/147‑1 (MQ=255)                                                              aaGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAgg                                                                                           <  8:244715/147‑1 (MQ=255)                                                                gCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGa                                                                                      <  7:301853/149‑1 (MQ=255)                                                                    ggCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGaccac                                                                                  <  6:126298/149‑1 (MQ=255)                                                                    ggCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGaccac                                                                                  <  1:224016/149‑1 (MQ=255)                                                                            gtcggtcTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGGATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCaccaggacca                                                                          <  5:100502/149‑1 (MQ=255)                                                                            gtcggtcTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCaccaggac                                                                            >  2:181474/1‑147 (MQ=255)                                                                               ggtcTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCACTTCGGGCAGGC‑TGACAaccaggaccagcc                                                                       >  8:244743/1‑147 (MQ=255)                                                                                      cTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGAt                                                                <  7:47619/149‑1 (MQ=255)                                                                                      cTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGAt                                                                >  2:280318/1‑149 (MQ=255)                                                                                            aTCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATcgccgc                                                          >  5:247609/1‑149 (MQ=255)                                                                                               aGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCttt                                                       >  4:234144/1‑149 (MQ=255)                                                                                               aGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCttt                                                       >  2:186368/1‑149 (MQ=255)                                                                                                 gTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCa                                                                     <  7:301559/133‑1 (MQ=255)                                                                                                 gTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCa                                                                     >  8:301559/1‑133 (MQ=255)                                                                                                                    tCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTGGACGCCGCCAGCAGTTCGGGCCGGCATCACAACAAGCACCAGCCATTTGAACCCCCATTTCCCCCGATGATTACgca                                      >  1:265219/1‑149 (MQ=255)                                                                                                                       aGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATgcg                               <  1:280318/149‑1 (MQ=255)                                                                                                                           aTTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAg                            >  2:64997/1‑148 (MQ=255)                                                                                                                                        ttcCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCAGGCGCAGAAAGGCCGAGACCt              >  8:138604/1‑149 (MQ=255)                                                                                                                                             cccGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTtggcccgggtggaagaatacgccgaatgcctcgatgccaacccgccggtttacctgatgctgagcaagaccgaccagttgccgggcttcagccagg                     <  7:191046‑M2/141‑97 (MQ=255)                                                                                                                                             cccGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTtggcccgggtggaagaatacgccgaatgcctcgatgccaacccgccggtttacctgatgctgagcaagaccgaccagttgccgggcttcagccagg                     >  8:191046‑M2/1‑45 (MQ=255)                                                                                                                                              ccGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTtggcccgggtggaagaatacgccgaatgcctcgatgccaacccgccggtttacctgatgctgagcaagaccgaccagttgccgggcttcagccaggctttcgacg            <  2:320185‑M2/149‑106 (MQ=255)                                                                                                                                              ccGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTgg        >  5:85920/1‑149 (MQ=255)                                                                                                                                                  gCCAacagcgatgagcgcaatgccctggctgcccagctggtggcccgggtggaagaatacgccgaatgcctcgatgccaacccgccggtttacctgatgctgagcaagaccgaccagttgccgggcttcagccaggctttcgacggcct        <  8:301853‑M1/149‑146 (MQ=255)                                                                                                                                                  gCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGa    <  1:181474/149‑1 (MQ=255)                                                                                                                                                    caccaGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGAtt  >  1:171384/1‑149 (MQ=255)                                                                                                                                                     aacagcgatgagcgcaatgccctggctgcccagctggtggcccgggtggaagaatacgccgaatgcctcgatgccaacccgccggtttacctgatgctgagcaagaccgaccagttgccgggcttcagccaggctttcgacggcctcga     >  3:298702‑M1/1‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                        AAAGGTCATGCCCAGCGGCTGCTGGCGTTCGTGCAGGTCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATT  >  NC_002947/3485084‑3485379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.