New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3485232	33 (0.630)	3 (0.060)	3/256	NT	7.8%	coding (692/3804 nt)	PP_3091	membrane protein
	?	NC_002947	= 3485268	39 (0.780)					coding (656/3804 nt)	PP_3091	membrane protein

TCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAGCGCCCGGCGGTGTCGATCAT  >  NC_002947/3485121‑3485416                                                                                                                                                    |                                                                                                                                                         tCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTt                                                                                                                                                         >  3:298702‑M2/1‑148 (MQ=255)    aGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTtggc                                                                                                                                                      <  8:301853‑M2/149‑5 (MQ=255)            gAATGCCTGGCTGAAGCGCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCTTTCGGGGTATTCTTCCACCCGGGGCACCAGCTGGTCAGCCAGGGCATTGCGCTCTTCGCTGTTG‑‑‑GCCGCcagca                                                                                                                                           <  6:175189/149‑1 (MQ=255)             gttgCCGGGCTTCAGCCAGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTAG‑‑‑GCCGCcagcag                                                                                                                                          >  4:197095/4‑149 (MQ=255)              aaGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGt                                                                                                                                         >  3:16414/1‑149 (MQ=255)                         aaGCCCGGCAACTGGTCGGTCTTGCTCATCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑t                                                                                                                             <  7:50494/149‑1 (MQ=255)                         aaGCCCGGCAACTGGTCGGTCTTGCTCAGCATCATGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAgg                                                                                                                                <  2:282185/147‑1 (MQ=255)                         aaGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAgg                                                                                                                                <  8:244715/147‑1 (MQ=255)                           gCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGa                                                                                                                           <  7:301853/149‑1 (MQ=255)                               ggCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGaccac                                                                                                                       <  1:224016/149‑1 (MQ=255)                               ggCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGaccac                                                                                                                       <  6:126298/149‑1 (MQ=255)                                       gtcggtcTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGGATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCaccaggacca                                                                                                               <  5:100502/149‑1 (MQ=255)                                       gtcggtcTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCaccaggac                                                                                                                 >  2:181474/1‑147 (MQ=255)                                          ggtcTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCACTTCGGGCAGGC‑TGACAaccaggaccagcc                                                                                                            >  8:244743/1‑147 (MQ=255)                                                 cTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGAt                                                                                                     >  2:280318/1‑149 (MQ=255)                                                 cTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGAt                                                                                                     <  7:47619/149‑1 (MQ=255)                                                       aTCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATcgccgc                                                                                               >  5:247609/1‑149 (MQ=255)                                                          aGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCttt                                                                                            >  2:186368/1‑149 (MQ=255)                                                          aGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCttt                                                                                            >  4:234144/1‑149 (MQ=255)                                                            gTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCa                                                                                                          >  8:301559/1‑133 (MQ=255)                                                            gTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCa                                                                                                          <  7:301559/133‑1 (MQ=255)                                                                               tCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTGGACGCCGCCAGCAGTTCGGGCCGGCATCACAACAAGCACCAGCCATTTGAACCCCCATTTCCCCCGATGATTACgca                                                                           >  1:265219/1‑149 (MQ=255)                                                                                  aGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATgcg                                                                    <  1:280318/149‑1 (MQ=255)                                                                                      aTTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAg                                                                 >  2:64997/1‑148 (MQ=255)                                                                                                   ttcCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCAGGCGCAGAAAGGCCGAGACCt                                                   >  8:138604/1‑149 (MQ=255)                                                                                                        cccGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTtggcccgggtggaagaatacgccgaatgcctcgatgccaacccgccggtttacctgatgctgagcaagaccgaccagttgccgggcttcagccagg                                                          >  8:191046‑M2/1‑45 (MQ=255)                                                                                                        cccGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTtggcccgggtggaagaatacgccgaatgcctcgatgccaacccgccggtttacctgatgctgagcaagaccgaccagttgccgggcttcagccagg                                                          <  7:191046‑M2/141‑97 (MQ=255)                                                                                                         ccGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTtggcccgggtggaagaatacgccgaatgcctcgatgccaacccgccggtttacctgatgctgagcaagaccgaccagttgccgggcttcagccaggctttcgacg                                                 <  2:320185‑M2/149‑106 (MQ=255)                                                                                                         ccGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTgg                                             >  5:85920/1‑149 (MQ=255)                                                                                                             gCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGa                                         <  1:181474/149‑1 (MQ=255)                                                                                                               caccaGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGAtt                                       >  1:171384/1‑149 (MQ=255)                                                                                                                            gCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAg                          >  1:129605/1‑149 (MQ=255)                                                                                                                            gCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAg                          >  3:55790/1‑149 (MQ=255)                                                                                                                             ccAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAgg                         >  4:276358/1‑149 (MQ=255)                                                                                                                                   cATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAgcgc                   <  1:64997/149‑1 (MQ=255)                                                                                                                                    aTTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAGCGcc                  >  5:303902/1‑149 (MQ=255)                                                                                                                                         gcTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAGCGCCcggcg             <  6:85920/149‑1 (MQ=255)                                                                                                                                         gcTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAGCGCCcggcg             >  7:295923/1‑149 (MQ=255)                                                                                                                                         gcTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAGCGCCcggcg             <  3:276358/149‑1 (MQ=255)                                                                                                                                             aTCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGGCGATTGGTCGTCGCGCAGGTAGCGCCCGGCGgtgt         >  1:119415/1‑149 (MQ=255)                                                                                                                                             aTCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAGCGCCCGGCGgtgt         <  5:266039/149‑1 (MQ=255)                                                                                                                                             aTCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAGCGCCCGGCGgtgt         <  4:55790/149‑1 (MQ=255)                                                                                                                                             aTCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAGCGCCCGGCGgtgt         <  3:234144/149‑1 (MQ=255)                                                                                                                                              tCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAGCGCCCGGCGGTGTc        <  2:265219/149‑1 (MQ=255)                                                                                                                                                    ttG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGTAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAGCGCCCGGCGGTGTCGatcat  <  3:197095/149‑1 (MQ=255)                                                                                                                                                    ttG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACAAGGCCATTGATCGACGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAGCGCCCGGCGGTGTCGatcat  >  4:258719/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                         TCGAGGCCGTCGAAAGCCTGGCTGAAGCCCGGCAACTGGTCGGTCTTGCTCAGCATCAGGTAAACCGGCGGGTTGGCATCGAGGCATTCGGCGTATTCTTCCACCCGGGCCACCAGCTGGGCAGCCAGGGCATTGCGCTCATCGCTGTTG‑‑‑GCCGCCAGCAGTTCGGGCAGGC‑TGACCACCAGGACCAGGCCATTGATCGCCGCTTTGCCGCGCTGCTTACGCAGCATGCGCAGAAAGGCCGAGAACTCGCTGGCCGATTGGTCGTCGCGCAGGTAGCGCCCGGCGGTGTCGATCAT  >  NC_002947/3485121‑3485416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.