New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3608344	34 (0.650)	3 (0.060)	3/252	NT	8.0%	coding (773/2265 nt)	PP_3182	GGDEF domain‑containing protein
	?	NC_002947	= 3608370	37 (0.750)					coding (747/2265 nt)	PP_3182	GGDEF domain‑containing protein

AGCTGCTGATTGACCTGCTGGGCATGTTCCAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGTTTAGCGCCGGCAGCG  >  NC_002947/3608200‑3608488                                                                                                                                                  |                                                                                                                                                   aGCTGCTGATTGACCTGCTGTGCAAGTTCCAGCGCGTCGAACGCCTCCAGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATCCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGa                                                                                                                                                <  8:58958/149‑1 (MQ=255) aGCTGCTGATTGACCTGCTGGGCATGTTCCAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGAAATAGGCCAGCGTCg                                                                                                                                                 <  4:43801/148‑1 (MQ=255)  gctgctGATTGACCTGCTGGGCATGTTCCAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAg                                                                                                                                               <  4:27792/149‑1 (MQ=255)      ctgATTGACCTGCTGGGCATGTTCCAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGt                                                                                                                                            <  2:152665/148‑1 (MQ=255)              ccTGCTGGGCATGTTCCAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGAtt                                                                                                                                   >  5:269725/1‑149 (MQ=255)                          gTTCCAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAAGCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGcg                                                                                                                      >  2:316732‑M2/1‑146 (MQ=255)                           ttCCAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGcgct                                                                                                                    <  2:26677‑M2/149‑5 (MQ=255)                              cAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGccaggcagaaatcctcgcaccctcgacgctggc                                                                                                                   <  6:287851‑M1/149‑34 (MQ=255)                              cAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGcgctggc                                                                                                                 <  4:60497‑M2/149‑8 (MQ=255)                                   cgTCGAACTCATCCTGGCGCTTGAGCAGCAGGCGGAAGGTCCATAGCAGGCTGGACA‑GTATCATCAGGGTCATGCTCAGATTCAAACAGAAATCCCTGCAATAGTCAACCGTCTACGGTGCTAGGATTTAAT‑CCT‑GGAGCTCGCTGac                                                                                                             >  4:257886/1‑148 (MQ=255)                                   cgTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGacc                                                                                                            <  8:206466/149‑1 (MQ=255)                                       gAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCAGGGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGaccac                                                                                                          >  1:84527/1‑148 (MQ=255)                                       gAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGAccacca                                                                                                        >  6:284555/1‑149 (MQ=255)                                        aaCGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGccaggcagaaatcctcgcaccctcgacgctgg                                                                                                                    <  7:23276‑M1/138‑33 (MQ=255)                                        aaCGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGccaggcagaaatcctcgcaccctcgacgctgg                                                                                                                    >  8:23276‑M1/1‑106 (MQ=255)                                             ctcctGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTg                                                                                                   >  2:185778/1‑148 (MQ=255)                                                 tGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGcc                                                                                              >  8:64418/1‑149 (MQ=255)                                                   gcgcTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCtt                                                                                            <  3:37391/149‑1 (MQ=255)                                                          cgcAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCAGGCTGACCACCACGCTGAAGCCTTGCTCgg                                                                                      <  1:26677/148‑1 (MQ=255)                                                                 tgcgcCAGGTCCATTGGAGGCTGGCCA‑GGATCATCTGTGTAATGCTCAGGTTCAACCAGAACTGCCGTTAATAGGACAGCGTCGAGTGTGCGAGGATTTCTG‑CCT‑GGCTCTGGGTGACCACAACGCTGAAGCCTTGCTCGGGTACAcgg                                                                              <  7:72451/148‑1 (MQ=255)                                                                      aaGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTGTGCTAAGCGATGGCTGACCACAACCCAGAAACCTTGCTAGGGAACAccgcgg                                                                           >  1:109398/1‑149 (MQ=255)                                                                       aGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATACGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTac                                                                        <  7:126362/149‑1 (MQ=255)                                                                            cATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCgg                                                                                      >  8:201825/1‑130 (MQ=255)                                                                            cATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACAACCACGCTGAAGCCTTGCTCgg                                                                                      <  7:201825/130‑1 (MQ=255)                                                                                gCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTg                                                                <  6:269725/148‑1 (MQ=255)                                                                                         ccA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCtt                                                                                            >  6:285310/1‑111 (MQ=255)                                                                                         ccA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCtt                                                                                            <  5:285310/111‑1 (MQ=255)                                                                                                tcatcaGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACAGCGGTACACGCTTTGGTAGGCATCACCCGCt                                                <  5:284555/149‑1 (MQ=255)                                                                                                          cATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTggg                                      >  6:259832/1‑149 (MQ=255)                                                                                                            tGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTc                                    <  3:60497/149‑1 (MQ=255)                                                                                                                       aaCCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGc                         >  4:309776/1‑149 (MQ=255)                                                                                                                          cAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTc                      >  7:119131/1‑149 (MQ=255)                                                                                                                           aGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCg                     >  4:284161/1‑149 (MQ=255)                                                                                                                            gAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCgg                    >  6:102822/1‑149 (MQ=255)                                                                                                                                 gCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGtt                >  3:291044/1‑148 (MQ=255)                                                                                                                                  ccGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGtt                <  2:84527/147‑1 (MQ=255)                                                                                                                                     ggAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTgg                                       >  1:300192/1‑121 (MQ=255)                                                                                                                                     ggAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTgg                                       >  1:305011/1‑121 (MQ=255)                                                                                                                                     ggAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTgg                                       <  2:300192/121‑1 (MQ=255)                                                                                                                                     ggAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTgg                                       <  2:305011/121‑1 (MQ=255)                                                                                                                                       aaTAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGttt               <  1:257384/143‑1 (MQ=255)                                                                                                                                       aaTAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGttt               >  2:257384/1‑143 (MQ=255)                                                                                                                                            gCCAGCGccaggcagaaatcctcgcaccctcgacgctggcctattcccggcagttctggttgaacctgagcatgaccctgatgatcctggccagcctgctatggaccttgcgcctgctgcgcaagcgccaggaggcgttcgacgcgctg      <  4:60497‑M1/149‑143 (MQ=255)                                                                                                                                            gCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGcgctggcctattcccggcagttctggttgaacctgagcatgaccctgatgatcctggccagcctgctatggaccttgcgcctgctgcgcaagcgccaggaggcgttcgacgcgctg    <  6:287851‑M2/149‑117 (MQ=255)                                                                                                                                             ccAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGcgctggcctattcccggcagttctggttgaacctgagcatgaccctgatgatcctggccagcctgctatggaccttgcgcctgctgcgcaagcgccaggaggcgtt              <  7:23276‑M2/138‑107 (MQ=255)                                                                                                                                             ccAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGcgctggcctattcccggcagttctggttgaacctgagcatgaccctgatgatcctggccagcctgctatggaccttgcgcctgctgcgcaagcgccaggaggcgtt              >  8:23276‑M2/1‑32 (MQ=255)                                                                                                                                             ccAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGTTTAGCGCCGGCAGc   >  5:15726/1‑149 (MQ=255)                                                                                                                                               aGCGccaggcagaaatcctcgcaccctcgacgctggcctattcccggcagttctggttgaacctgagcatgaccctgatgatcctggccagcctgctatggaccttgcgcctgctgcgcaagcgccaggaggcgttcgacgcgctggaa   <  2:26677‑M1/149‑146 (MQ=255)                                                                                                                                                 cgccaggcagaaatcctcgcaccctcgacgctggcctattcccggcagttctgcttgaacctgagcatgaccctgatgatcctggccagcctgctatggaccttgcgcctgctgcgcaagcgccaggaggcgttcgacgcgctggaac  >  2:316732‑M1/1‑2 (MQ=255)                                                                                                                                                  |                                                                                                                                                   AGCTGCTGATTGACCTGCTGGGCATGTTCCAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGTTTAGCGCCGGCAGCG  >  NC_002947/3608200‑3608488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.