New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3608344	34 (0.650)	3 (0.060)	3/252	NT	8.0%	coding (773/2265 nt)	PP_3182	GGDEF domain‑containing protein
	?	NC_002947	= 3608370	37 (0.750)					coding (747/2265 nt)	PP_3182	GGDEF domain‑containing protein

GTTCCAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGTTTAGCGCCGGCAGCGGGGGCTGCAATAGGTCGCCGGCAGTCAC  >  NC_002947/3608225‑3608516                                                                                                                                                     |                                                                                                                                                   gTTCCAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAAGCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGcg                                                                                                                                                  >  2:316732‑M2/1‑146 (MQ=255)  ttCCAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGcgct                                                                                                                                                <  2:26677‑M2/149‑5 (MQ=255)     cAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGcgctggc                                                                                                                                             <  4:60497‑M2/149‑8 (MQ=255)          cgTCGAACTCATCCTGGCGCTTGAGCAGCAGGCGGAAGGTCCATAGCAGGCTGGACA‑GTATCATCAGGGTCATGCTCAGATTCAAACAGAAATCCCTGCAATAGTCAACCGTCTACGGTGCTAGGATTTAAT‑CCT‑GGAGCTCGCTGac                                                                                                                                         >  4:257886/1‑148 (MQ=255)          cgTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGacc                                                                                                                                        <  8:206466/149‑1 (MQ=255)              gAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCAGGGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGaccac                                                                                                                                      >  1:84527/1‑148 (MQ=255)              gAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGAccacca                                                                                                                                    >  6:284555/1‑149 (MQ=255)                    ctcctGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTg                                                                                                                               >  2:185778/1‑148 (MQ=255)                        tGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGcc                                                                                                                          >  8:64418/1‑149 (MQ=255)                          gcgcTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCtt                                                                                                                        <  3:37391/149‑1 (MQ=255)                                 cgcAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCAGGCTGACCACCACGCTGAAGCCTTGCTCgg                                                                                                                  <  1:26677/148‑1 (MQ=255)                                        tgcgcCAGGTCCATTGGAGGCTGGCCA‑GGATCATCTGTGTAATGCTCAGGTTCAACCAGAACTGCCGTTAATAGGACAGCGTCGAGTGTGCGAGGATTTCTG‑CCT‑GGCTCTGGGTGACCACAACGCTGAAGCCTTGCTCGGGTACAcgg                                                                                                          <  7:72451/148‑1 (MQ=255)                                             aaGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTGTGCTAAGCGATGGCTGACCACAACCCAGAAACCTTGCTAGGGAACAccgcgg                                                                                                       >  1:109398/1‑149 (MQ=255)                                              aGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATACGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTac                                                                                                    <  7:126362/149‑1 (MQ=255)                                                   cATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCgg                                                                                                                  >  8:201825/1‑130 (MQ=255)                                                   cATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACAACCACGCTGAAGCCTTGCTCgg                                                                                                                  <  7:201825/130‑1 (MQ=255)                                                       gCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTg                                                                                            <  6:269725/148‑1 (MQ=255)                                                                ccA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCtt                                                                                                                        <  5:285310/111‑1 (MQ=255)                                                                ccA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCtt                                                                                                                        >  6:285310/1‑111 (MQ=255)                                                                       tcatcaGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACAGCGGTACACGCTTTGGTAGGCATCACCCGCt                                                                            <  5:284555/149‑1 (MQ=255)                                                                                 cATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTggg                                                                  >  6:259832/1‑149 (MQ=255)                                                                                   tGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTc                                                                <  3:60497/149‑1 (MQ=255)                                                                                              aaCCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGc                                                     >  4:309776/1‑149 (MQ=255)                                                                                                 cAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTc                                                  >  7:119131/1‑149 (MQ=255)                                                                                                  aGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCg                                                 >  4:284161/1‑149 (MQ=255)                                                                                                   gAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCgg                                                >  6:102822/1‑149 (MQ=255)                                                                                                        gCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGtt                                            >  3:291044/1‑148 (MQ=255)                                                                                                         ccGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGtt                                            <  2:84527/147‑1 (MQ=255)                                                                                                            ggAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTgg                                                                   <  2:300192/121‑1 (MQ=255)                                                                                                            ggAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTgg                                                                   <  2:305011/121‑1 (MQ=255)                                                                                                            ggAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTgg                                                                   >  1:305011/1‑121 (MQ=255)                                                                                                            ggAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTgg                                                                   >  1:300192/1‑121 (MQ=255)                                                                                                              aaTAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGttt                                           >  2:257384/1‑143 (MQ=255)                                                                                                              aaTAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGttt                                           <  1:257384/143‑1 (MQ=255)                                                                                                                   gCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGcgctggcctattcccggcagttctggttgaacctgagcatgaccctgatgatcctggccagcctgctatggaccttgcgcctgctgcgcaagcgccaggaggcgttcgacgcgctg                                <  6:287851‑M2/149‑117 (MQ=255)                                                                                                                    ccAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGcgctggcctattcccggcagttctggttgaacctgagcatgaccctgatgatcctggccagcctgctatggaccttgcgcctgctgcgcaagcgccaggaggcgtt                                          <  7:23276‑M2/138‑107 (MQ=255)                                                                                                                    ccAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGcgctggcctattcccggcagttctggttgaacctgagcatgaccctgatgatcctggccagcctgctatggaccttgcgcctgctgcgcaagcgccaggaggcgtt                                          >  8:23276‑M2/1‑32 (MQ=255)                                                                                                                    ccAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGTTTAGCGCCGGCAGc                               >  5:15726/1‑149 (MQ=255)                                                                                                                              gggTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGTTTAGCGCCGGCAGCGGGGGCTGCa                     <  6:15726/149‑1 (MQ=255)                                                                                                                               ggTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGTTTAGCGCCGGCAGCGGGGGCTGCaa                    <  5:259832/149‑1 (MQ=255)                                                                                                                                 tGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTCGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGTTTAGCGCCGGCAGCGGGGGCTGCAATa                  <  7:64418/149‑1 (MQ=255)                                                                                                                                  gCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGATTAGCGCCGGCAGCGGGGGCTGCAATAg                 <  1:185778/149‑1 (MQ=255)                                                                                                                                   cGAGGATTTCTG‑CCT‑GGCGCTGGCTGACAACCACGCTTAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCACTTCGGTGTTTAGCGCCGTCATCGGGGGCTACAATAg                 <  3:257886/148‑1 (MQ=255)                                                                                                                                    gAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGTTTAGCGCCGGCAGCGGGGGCTGCAATAGGt               >  5:179782/1‑149 (MQ=255)                                                                                                                                    gAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCAGCTTCGGTGTTTAGCGCCGGCAGCGGGGGCTGCAATAGGt               >  5:23860/1‑149 (MQ=255)                                                                                                                                                     gcgcTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGTTTAGCGCCGGCAGCGGGGGCTGCAATAGGTCGCCGGCAGTcac  <  3:309776/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GTTCCAGCGCGTCGAACGCCTCCTGGCGCTTGCGCAGCAGGCGCAAGGTCCATAGCAGGCTGGCCA‑GGATCATCAGGGTCATGCTCAGGTTCAACCAGAACTGCCGGGAATAGGCCAGCGTCGAGGGTGCGAGGATTTCTG‑CCT‑GGCGCTGGCTGACCACCACGCTGAAGCCTTGCTCGGGTACACGGCGGTACACGCTTTGGTAGGCATCACCCGCTACGTACTGGGTCAGCATGCCCGCTTCGGTGTTTAGCGCCGGCAGCGGGGGCTGCAATAGGTCGCCGGCAGTCAC  >  NC_002947/3608225‑3608516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.