New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3711580	37 (0.710)	3 (0.060)	3/246	NT	8.0%	coding (111/759 nt)	paaC	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
	?	NC_002947	= 3711623	35 (0.730)					coding (68/759 nt)	paaC	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta

GACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGC  >  NC_002947/3711433‑3711726                                                                                                                                                    |                                                                                                                                                   gACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGct                                                                                                                                                   <  3:300941/149‑1 (MQ=255)         gcagGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTc                                                                                                                                            >  1:159245/1‑148 (MQ=255)          gagGTTGCGGTAGGCGCGCTCGTCACGTGGGATCGGCAGGGCATCGGAATCTCGGCTATCGTCGAGAAGCTCGGCGGCTTACTCCTGGCAGTTGCGGGCCTGGCCGACCTGATCGAGGCCGACGTTCATCAGGGGCAGCTCTTCCTCGa                                                                                                                                          <  8:270851/148‑1 (MQ=255)           agGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGAt                                                                                                                                         <  1:281076/149‑1 (MQ=255)             gTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATgg                                                                                                                                       >  3:109663/1‑149 (MQ=255)                  ggTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCggg                                                                                                                                  <  5:8596/149‑1 (MQ=255)                         gcgcTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCCGCGGCAAAATACAGACAGATGCGCGCCAGGCCGACCAGATCGAGGCCGACGAACATCAGGGCCAGCTCTTCCACGATGCCCGCGGCACgg                                                                                                                            >  6:61918/1‑148 (MQ=255)                             tCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCCATCAGCTCGGCGTCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCcaca                                                                                                                       <  7:242862/149‑1 (MQ=255)                                  aCGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCAtt                                                                                                                  >  1:263994/1‑149 (MQ=255)                                   cggcggAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGACCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTc                                                                                                                 <  4:237079/149‑1 (MQ=255)                                       ggAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATgg                                                                                                                                       <  6:300171/123‑1 (MQ=255)                                       ggAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCg                                                                                                                >  2:137399/1‑146 (MQ=255)                                       ggAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCg                                                                                                                >  2:177938/1‑146 (MQ=255)                                        gAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCaga                                                                                                            <  2:18250/149‑1 (MQ=255)                                                  gcatcggcatcTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCgcctctgcgaatggtgtggccgtgccccggccatcgaggaagagctggcc                                                                                                  <  3:50539‑M1/149‑51 (MQ=255)                                                    atcggcatcTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCgctggccct                                                                                                <  6:186574‑M2/149‑10 (MQ=255)                                                       ggcatcTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGa                                                                                             <  8:88969/149‑1 (MQ=255)                                                          atcTCGGCCATCGTCGAGCAGCTCGGCGTCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGAc                                                                                            >  8:206461/1‑147 (MQ=255)                                                               ggCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGgcg                                                                                     >  2:308794/1‑149 (MQ=255)                                                                 ccATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCt                                                                                   <  1:137399/149‑1 (MQ=255)                                                                         gAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCgcctctgcgaatggtgtggccgtgccccggccatcgaggaagagctggccctga                                                                                              >  2:51594‑M1/1‑76 (MQ=255)                                                                         gAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCgcctctgcgaatggtgtggccgtgccccggccatcgaggaagagctggccctga                                                                                              <  1:51594‑M1/130‑55 (MQ=255)                                                                          agcagcTCGGCGTCATACTCCATCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAg                                                                          <  7:206461/149‑1 (MQ=255)                                                                          agcagcTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAg                                                                          >  1:114642/1‑149 (MQ=255)                                                                               cTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCaa                                                                       >  1:150351/1‑147 (MQ=255)                                                                                       cATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAg                                                             <  2:159245/149‑1 (MQ=255)                                                                                       cATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAg                                                             <  2:114642/149‑1 (MQ=255)                                                                                            tCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGTCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGa                                                         >  6:175409/1‑148 (MQ=255)                                                                                              cagccagTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGAt                                                        >  5:61592/1‑147 (MQ=255)                                                                                                 ccagTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCGGGTAGGGGATAAggg                                                   <  5:186574/149‑1 (MQ=255)                                                                                                       gCGGGCCTGGCCGACCAGATCGAGGCCGACGATCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGcttctt                                             >  4:81022/1‑149 (MQ=255)                                                                                                         gggCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTa                                           <  1:308794/149‑1 (MQ=255)                                                                                                            ccTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGc                                        <  6:61592/149‑1 (MQ=255)                                                                                                                 ccGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGc                                   >  7:34550/1‑149 (MQ=255)                                                                                                                  cGACCAGCTCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGTTGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGcc                                  <  8:172929/149‑1 (MQ=255)                                                                                                                   gACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGc                                                  <  7:530/132‑1 (MQ=255)                                                                                                                   gACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGc                                                  >  8:530/1‑132 (MQ=255)                                                                                                                      cAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCAt                                      >  7:93061/1‑141 (MQ=255)                                                                                                                      cAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCAt                                      <  8:93061/141‑1 (MQ=255)                                                                                                                        gATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCACGATGGCCGGGGCACCGCCACACCCTTCCCAGACGCGCTGGCCCTGGACCAGGGCGCTGACGCCGAGCAACACCAGGTAGGGGAAAAGGGCTTCTTTATGCATGGCCCACCt                             >  5:54970/1‑148 (MQ=255)                                                                                                                                         atcaGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTtc            <  1:177938/148‑1 (MQ=255)                                                                                                                                          tcaGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCgctggccctgatgaacgtcggcctcgatctggtcggccaggcccgcaactggctggagtatgccgccgagctgctc                             >  2:51594‑M2/1‑54 (MQ=255)                                                                                                                                          tcaGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCgctggccctgatgaacgtcggcctcgatctggtcggccaggcccgcaactggctggagtatgccgccgagctgctc                             <  1:51594‑M2/130‑77 (MQ=255)                                                                                                                                            aGGGCCAGCgcctctgcgaatggtgtggccgtgccccggccatcgaggaagagctggccctgatgaacgtcggcctcgatctggtcggccaggcccgcaactggctggagtatgccgccgagctgctcgacgatggccgagatgccgat        <  6:186574‑M1/149‑141 (MQ=255)                                                                                                                                            aGGGCCAGCTATTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTtcgtcg        <  3:81022/149‑1 (MQ=255)                                                                                                                                              ggCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCgctggccctgatgaacgtcggcctcgatctggtcggccaggcccgcaactggctggagtatgccgccgagctgctcgacgatggccgagatgccgatgc      <  3:50539‑M2/149‑100 (MQ=255)                                                                                                                                                  aGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGc  <  2:150351/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGC  >  NC_002947/3711433‑3711726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.