New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3711580	37 (0.710)	3 (0.060)	3/246	NT	8.0%	coding (111/759 nt)	paaC	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
	?	NC_002947	= 3711623	35 (0.730)					coding (68/759 nt)	paaC	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta

ATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTGTCGTCCGAGGGGGC  >  NC_002947/3711484‑3711770                                                                                                                                            |                                                                                                                                                    atcggcatcTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCgctggccct                                                                                                                                            <  6:186574‑M2/149‑10 (MQ=255)    ggcatcTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGa                                                                                                                                         <  8:88969/149‑1 (MQ=255)       atcTCGGCCATCGTCGAGCAGCTCGGCGTCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGAc                                                                                                                                        >  8:206461/1‑147 (MQ=255)            ggCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGgcg                                                                                                                                 >  2:308794/1‑149 (MQ=255)              ccATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCt                                                                                                                               <  1:137399/149‑1 (MQ=255)                       agcagcTCGGCGTCATACTCCATCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAg                                                                                                                      <  7:206461/149‑1 (MQ=255)                       agcagcTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAg                                                                                                                      >  1:114642/1‑149 (MQ=255)                            cTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCaa                                                                                                                   >  1:150351/1‑147 (MQ=255)                                    cATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAg                                                                                                         <  2:114642/149‑1 (MQ=255)                                    cATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAg                                                                                                         <  2:159245/149‑1 (MQ=255)                                         tCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGTCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGa                                                                                                     >  6:175409/1‑148 (MQ=255)                                           cagccagTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGAt                                                                                                    >  5:61592/1‑147 (MQ=255)                                              ccagTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCGGGTAGGGGATAAggg                                                                                               <  5:186574/149‑1 (MQ=255)                                                    gCGGGCCTGGCCGACCAGATCGAGGCCGACGATCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGcttctt                                                                                         >  4:81022/1‑149 (MQ=255)                                                      gggCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTa                                                                                       <  1:308794/149‑1 (MQ=255)                                                         ccTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGc                                                                                    <  6:61592/149‑1 (MQ=255)                                                              ccGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGc                                                                               >  7:34550/1‑149 (MQ=255)                                                               cGACCAGCTCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGTTGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGcc                                                                              <  8:172929/149‑1 (MQ=255)                                                                gACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGc                                                                                              <  7:530/132‑1 (MQ=255)                                                                gACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGc                                                                                              >  8:530/1‑132 (MQ=255)                                                                   cAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCAt                                                                                  >  7:93061/1‑141 (MQ=255)                                                                   cAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCAt                                                                                  <  8:93061/141‑1 (MQ=255)                                                                     gATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCACGATGGCCGGGGCACCGCCACACCCTTCCCAGACGCGCTGGCCCTGGACCAGGGCGCTGACGCCGAGCAACACCAGGTAGGGGAAAAGGGCTTCTTTATGCATGGCCCACCt                                                                         >  5:54970/1‑148 (MQ=255)                                                                                      atcaGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTtc                                                        <  1:177938/148‑1 (MQ=255)                                                                                       tcaGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCgctggccctgatgaacgtcggcctcgatctggtcggccaggcccgcaactggctggagtatgccgccgagctgctc                                                                         <  1:51594‑M2/130‑77 (MQ=255)                                                                                       tcaGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCgctggccctgatgaacgtcggcctcgatctggtcggccaggcccgcaactggctggagtatgccgccgagctgctc                                                                         >  2:51594‑M2/1‑54 (MQ=255)                                                                                         aGGGCCAGCTATTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTtcgtcg                                                    <  3:81022/149‑1 (MQ=255)                                                                                           ggCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCgctggccctgatgaacgtcggcctcgatctggtcggccaggcccgcaactggctggagtatgccgccgagctgctcgacgatggccgagatgccgatgc                                                  <  3:50539‑M2/149‑100 (MQ=255)                                                                                               aGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGc                                              <  2:150351/149‑1 (MQ=255)                                                                                                       cTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAg                                        >  7:42522/1‑147 (MQ=255)                                                                                                           aTGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTg                                  >  7:84181/1‑149 (MQ=255)                                                                                                               ccGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTtcgtcg                                                    <  7:156807/127‑1 (MQ=255)                                                                                                               ccGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTtcgtcg                                                    >  8:156807/1‑127 (MQ=255)                                                                                                                   ggCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGc                           >  3:11686/1‑148 (MQ=255)                                                                                                                          ccACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGAcc                   >  5:114034/1‑149 (MQ=255)                                                                                                                          ccACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGAcc                   >  5:119180/1‑149 (MQ=255)                                                                                                                           cacaCCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGGTCGTAGAAGCTGGCATGGCGATAGACCt                  <  5:61918/149‑1 (MQ=255)                                                                                                                               ccATTCGCATAGGCGCTGGCCCTGGTCCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTCTGCATGGCCCTCCTCACATGTGGCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTgtc              <  7:58592/149‑1 (MQ=255)                                                                                                                                cATTCGCAGAGGCGCTGGCCCTGGACCAGGGCACTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGc                                              <  6:269146/116‑1 (MQ=255)                                                                                                                                cATTCGCAGAGGCGCTGGCCCTGGACCAGGGCACTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGc                                              >  5:269146/1‑116 (MQ=255)                                                                                                                                     gCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTGTCGTcc          >  7:178885/1‑147 (MQ=255)                                                                                                                                          ggCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTGTCGTCCGAggggg   <  6:119180/149‑1 (MQ=255)                                                                                                                                           gcgcTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTGTCGTCCGAggggg   <  6:114034/148‑1 (MQ=255)                                                                                                                                           gcgcTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTGTCGTCCGAGGGGGc  <  8:84181/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                    ATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGCAGAGGCGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTGTCGTCCGAGGGGGC  >  NC_002947/3711484‑3711770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.