New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3825683	27 (0.520)	4 (0.080)	4/256	NT	12.5%	coding (363/1020 nt)	ptxS	2‑ketogluconate utilization repressor
	?	NC_002947	= 3825702	30 (0.600)					coding (344/1020 nt)	ptxS	2‑ketogluconate utilization repressor

TCCAGGCCGACAAGGTCCACATTCAGCTCGGGCAATTGGCGGTCGACCAGCACCATGGGGATGTCACGCTGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGCCACTGAATAGGGGTTGAGGATATCGGCCACCAGCATGCCGATCA  >  NC_002947/3825540‑3825831                                                                                                                                                |                                                                                                                                                     tCCAGGCCGACAAGGTCCACATTCAGCTCGGGCAATTGGCGGTCGACCAGCACCATGGGGATGTCACGCTGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGagcgt                                                                                                                                                 >  1:136216‑M1/1‑144 (MQ=255)      gCCGACAAGGTCCACATTCAGCTCGGGCAATTGGCGGTCGACCAGCACCATGGGGATGTCACGCTGCGGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAggt                                                                                                                                            <  5:305913/149‑1 (MQ=255)           cAAGGTCCACATTCAGCTCGGGCAATTGGCGGTCGACCAGCACCATGGGGATGTCACGCTGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGa                                                                                                                                       >  3:239064/1‑149 (MQ=255)            aaGGTCCACATTCAGCTCGGGCAATTGGCGGTCGACCAGCACCATGGGGATGTCACGCTGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGAc                                                                                                                                      >  2:210825/1‑149 (MQ=255)                tCCACATTCAGCTCGGGCAATTGGCGGTCGACCAGCACCATGGGGATGTCACGCTGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCTGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTc                                                                                                                                  >  8:115958‑M2/1‑148 (MQ=255)                         aGCTCGGGCAATTGGCGGTCGACCAGCACCATGGGGATGTCACGCTGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGagcgtcaccacctggtggccctgcagag                                                                                                                          <  2:136216‑M1/148‑29 (MQ=255)                           cTCGGGCAATTGGCGGTCGACCAGCACCATGGGGATGTCACGCTGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGagcgtcaccacctggtggccctgcagagcta                                                                                                                       <  2:156866‑M1/149‑32 (MQ=255)                                                       aTGGGGATGTCACGCTGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCt                                                                                           <  4:239064/149‑1 (MQ=255)                                                         ggggATGTCACGCTGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGcaca                                                                                                     >  6:13288/1‑137 (MQ=255)                                                         ggggATGTCACGCTGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGcaca                                                                                                     <  5:13288/137‑1 (MQ=255)                                                                  aCGCTGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCt                                                                                >  4:5772/1‑149 (MQ=255)                                                                      tGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGagcgtcaccacctggtggccctgcaga                                                                                                                           >  6:308196‑M1/1‑75 (MQ=255)                                                                      tGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGagcgtcaccacctggtggccctgcaga                                                                                                                           <  5:308196‑M1/102‑28 (MQ=255)                                                                       gCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAAcc                                                                                     <  1:174139/139‑1 (MQ=255)                                                                       gCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAAcc                                                                                     >  2:174139/1‑139 (MQ=255)                                                                              gAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCg                                                                     <  1:210825/148‑1 (MQ=255)                                                                                 cagcTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTCTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGttt                                                                 <  4:107804/149‑1 (MQ=255)                                                                                    cTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCa                                                              >  1:40874/1‑149 (MQ=255)                                                                                          ggggTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGt                                                        <  2:101318/149‑1 (MQ=255)                                                                                             cgaagggCTGATCGTGAACACGCTCGGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAg                                                                        <  3:208827/125‑1 (MQ=255)                                                                                             cgaagggCTGATCGTGAACACGCTCGGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAg                                                                        >  4:208827/6‑130 (MQ=255)                                                                                                   gCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACgg                                               >  1:83648/1‑149 (MQ=255)                                                                                                    ccGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACAccacca                                                                                               >  1:126342/1‑100 (MQ=255)                                                                                                    ccGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACAccacca                                                                                               <  2:126342/100‑1 (MQ=255)                                                                                                     cGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGcc                                             <  3:5772/149‑1 (MQ=255)                                                                                                        gCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGCCACt                                          >  7:200035/1‑149 (MQ=255)                                                                                                           tgtTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGCCACTGaa                                       <  7:257124/149‑1 (MQ=255)                                                                                                             ttCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGCCACTGaa                                       >  4:130134/1‑147 (MQ=255)                                                                                                              tCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGCCACTGAATAg                                    >  8:304883/1‑149 (MQ=255)                                                                                                                       gCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGCCACTGAATAGGGGTTGAgg                           <  2:83648/149‑1 (MQ=255)                                                                                                                          cTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGCCa                                            <  4:47784/129‑1 (MQ=255)                                                                                                                                 gTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGCTTGGAGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGATTCCACGCCGTGCATCACGGCCACTGAATAGGTGTTGAGGATATCGGcca                 >  5:316585/1‑149 (MQ=255)                                                                                                                                     tAGCTCTGCAGGGCCACCAGGTGGTGACGCTcctgcagagctacaacgtcgaagggctgatcgtgaacacgctcggccaccaccccggcgagctgctcaacctgcagcgtgacatccccatggtgctggtcgaccgccaattgcccgag             <  2:156866‑M2/149‑119 (MQ=255)                                                                                                                                        ctctGCAGGGCCACCAGGTGGTGACGCTcctgcagagctacaacgtcgaagggctgatcgtgaacacgctcggccaccaccccggcgagctgctcaacctgcagcgtgacatccccatggtgctggtcgaccgccaattgcccgagct           <  2:136216‑M2/148‑121 (MQ=255)                                                                                                                                         tctGCAGGGCCACCAGGTGGTGACGCTcctgcagagctacaacgtcgaagggctgatcgtgaacacgctcggccaccaccccggcgagctgctcaacctgca                                                        <  5:308196‑M2/102‑76 (MQ=255)                                                                                                                                         tctGCAGGGCCACCAGGTGGTGACGCTcctgcagagctacaacgtcgaagggctgatcgtgaacacgctcggccaccaccccggcgagctgctcaacctgca                                                        >  6:308196‑M2/1‑27 (MQ=255)                                                                                                                                           tGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGCCACTGAATAGGGGTTGAGGATATCGGCCACCAGCATGcc       >  7:25602/1‑149 (MQ=255)                                                                                                                                              aGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGCCACTGAATAGGGGTTGAGGATATCGGCCACCAGCATGCCGAt    >  1:274322/1‑149 (MQ=255)                                                                                                                                               gggCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGCCACTGAATAGGGGTTGAGGATATCGGCCACCAGCATGCCGAt    >  3:24571/1‑148 (MQ=255)                                                                                                                                                ggCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGCCACTGAATAGGGGTTGAGGATATCGGCCACCAGCATGCCGAt    >  5:265866/1‑147 (MQ=255)                                                                                                                                                gagcgtcaccacctggtggccctgcagagctacaacgtcgaagggcagatcgtgaacacgctcggccaccaccccggcgagctgctcaacctgcagcgtgacatccccatggtgctggtcgaccgccaattgcccgagctgaatgtgga  >  8:115958‑M1/1‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     TCCAGGCCGACAAGGTCCACATTCAGCTCGGGCAATTGGCGGTCGACCAGCACCATGGGGATGTCACGCTGCAGGTTGAGCAGCTCGCCGGGGTGGTGGCCGAGCGTGTTCACGATCAGCCCTTCGACGTTGTAGCTCTGCAGGGCCACCAGGTGGTGACGCTCCTGCTCGTCGTCGCGGTTGGTGTTGCACACCACCAGGCTGTAACCATGCTGACGGCAGGCGGTTTCCACGCCGTGCATCACGGCCACTGAATAGGGGTTGAGGATATCGGCCACCAGCATGCCGATCA  >  NC_002947/3825540‑3825831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.