New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3967182 =	46 (0.880)	3 (0.060)	3/258	NT	6.7%	coding (1375/2001 nt)	ydcP	peptidase
	?	NC_002947	3967224 =	39 (0.770)					coding (1417/2001 nt)	ydcP	peptidase

GCAACGCACCTCCTCCGAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCAC  >  NC_002947/3967037‑3967329                                                                                                                                                  |                                                                                                                                                    gCAACGCACCTCCTCCGAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCgcag                                                                                                                                                   >  5:83840/1‑148 (MQ=255)     cGCACCTCCTCCGAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAgg                                                                                                                                               >  3:166908/1‑148 (MQ=255)        aCCTCCTCCGAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACt                                                                                                                                           >  1:232838/1‑149 (MQ=255)         gctcctcCGAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGTAGGCACTg                                                                                                                                          <  5:45481/148‑1 (MQ=255)         cctcctCCGAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTg                                                                                                                                          <  1:49658/149‑1 (MQ=255)         cctcctCCGAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTg                                                                                                                                          <  6:83840/149‑1 (MQ=255)          ctcctcCGAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTgg                                                                                                                                         <  1:172640/149‑1 (MQ=255)              tccGAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCAc                                                                                                                                            <  1:107680/142‑1 (MQ=255)              tccGAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCAc                                                                                                                                            >  2:107680/1‑142 (MQ=255)              tccGAACGCCGGGTCGGCGTGGAGTGGAACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAg                                                                                                                                       >  3:97279/1‑147 (MQ=255)                 gAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGtt                                                                                                                                  <  7:179870/149‑1 (MQ=255)                 gAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGtt                                                                                                                                  <  5:297437/149‑1 (MQ=255)                  aaCGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTg                                                                                                                                 >  5:288019/1‑149 (MQ=255)                      ccGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCAc                                                                                                                              >  4:43133/1‑148 (MQ=255)                              gCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTc                                                                                                                     >  1:56987/1‑149 (MQ=255)                                        gcgcctcgatggcttcgcggcgcagggccttgagctgcgagttgggaatgaagtacgcctgtggggcatccagttcgatacggtcggcgtggtacagggtggtgccCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTgg                                                                                                           >  5:283066‑M1/107‑149 (MQ=255)                                        gCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTgg                                                                                                           >  7:9822/1‑149 (MQ=255)                                          aCGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGc                                                                                                         <  4:166908/149‑1 (MQ=255)                                           cgcgGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGca                                                                                                        <  8:9822/149‑1 (MQ=255)                                                     ttcgcggcgcagggccttgagctgcgagttgggaatgaagtacgcctgtggggcatccagttcgatatggtcggcgtggtacagggtggtgccCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTg                                                                                                            >  3:54175‑M1/94‑135 (MQ=255)                                                     ttcgcggcgcagggccttgagctgcgagttgggaatgaagtacgcctgtggggcatccagttcgatatggtcggcgtggtacagggtggtgccCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTg                                                                                                            <  4:54175‑M1/42‑1 (MQ=255)                                                     cgcgAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTa                                                                                              <  7:294083/149‑1 (MQ=255)                                                         agcagcGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCAc                                                                                          <  3:43133/149‑1 (MQ=255)                                                                   gATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACTGCCCATTCGGCGTAGCCTACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGt                                                                                 <  1:103608/148‑1 (MQ=255)                                                                     tGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATc                                                                              <  3:264386/149‑1 (MQ=255)                                                                      gCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATc                                                                              >  8:193305/1‑148 (MQ=255)                                                                           cccTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACt                                                                         <  2:56987/148‑1 (MQ=255)                                                                           cccTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACt                                                                         <  4:97279/148‑1 (MQ=255)                                                                            ccTCATCAGTGAAGAAGGCGTGAGCGTTCAGGTGGACCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGAACTGGATCAGTTCCACGAACAGCTCGGCCAGCTGGGCAACACCCTCTACCACGACGACCGTATCCAACTg                                                                        >  4:233469/1‑148 (MQ=255)                                                                                    gTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCca                                                               >  4:24120/1‑149 (MQ=255)                                                                                       aagaagGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCcaca                                                             <  2:232838/148‑1 (MQ=255)                                                                                       aagaagGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAg                                                            >  5:258278/1‑149 (MQ=255)                                                                                        agaagGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAgg                                                           >  8:149809/1‑149 (MQ=255)                                                                                         gaagGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGc                                                          <  4:97025/149‑1 (MQ=255)                                                                                            ggCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTa                                                       <  4:300558/149‑1 (MQ=255)                                                                                              cGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACt                                                     <  7:149809/149‑1 (MQ=255)                                                                                               gggAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACCAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACtt                                                    <  6:230944/147‑1 (MQ=255)                                                                                                     gTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTcc                                              <  2:218792/149‑1 (MQ=255)                                                                                                      tGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTccc                                             <  7:193305/149‑1 (MQ=255)                                                                                                       gCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAAc                                                                          >  8:101425/1‑119 (MQ=255)                                                                                                       gCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAAc                                                                          <  7:101425/119‑1 (MQ=255)                                                                                                       gCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTccc                                             >  4:203843/1‑148 (MQ=255)                                                                                                        cAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGTCCCACAGGCGTACTTCATTCCCaa                                           <  7:200334/149‑1 (MQ=255)                                                                                                          ggTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACt                                         <  3:233469/149‑1 (MQ=255)                                                                                                              gCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTAc                                                      >  8:133989/1‑132 (MQ=255)                                                                                                              gCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTAc                                                      <  7:133989/132‑1 (MQ=255)                                                                                                               cccTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAg                                    <  6:288019/149‑1 (MQ=255)                                                                                                                     aCGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAg                              <  6:258278/149‑1 (MQ=255)                                                                                                                         cccATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGccc                          >  2:237701/1‑149 (MQ=255)                                                                                                                                       ccAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGc             >  5:153051/1‑148 (MQ=255)                                                                                                                                              gCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAgg     <  6:44529/149‑1 (MQ=255)                                                                                                                                              gCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAgg     <  3:24120/149‑1 (MQ=255)                                                                                                                                                 gcagcaGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCac  >  6:121413/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GCAACGCACCTCCTCCGAACGCCGGGTCGGCGTGGAGTGGCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCAC  >  NC_002947/3967037‑3967329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.