New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3967182 =	46 (0.880)	3 (0.060)	3/258	NT	6.7%	coding (1375/2001 nt)	ydcP	peptidase
	?	NC_002947	3967224 =	39 (0.770)					coding (1417/2001 nt)	ydcP	peptidase

GCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCACTGACTGCAGCACGCGTGCAGGCGCATCCGC  >  NC_002947/3967076‑3967359                                                                                                                                                     |                                                                                                                                        gcgcctcgatggcttcgcggcgcagggccttgagctgcgagttgggaatgaagtacgcctgtggggcatccagttcgatacggtcggcgtggtacagggtggtgccCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTgg                                                                                                                                         >  5:283066‑M1/107‑149 (MQ=255) gCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTgg                                                                                                                                         >  7:9822/1‑149 (MQ=255)   aCGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGc                                                                                                                                       <  4:166908/149‑1 (MQ=255)    cgcgGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGca                                                                                                                                      <  8:9822/149‑1 (MQ=255)              cgcgAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTa                                                                                                                            <  7:294083/149‑1 (MQ=255)                  agcagcGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCAc                                                                                                                        <  3:43133/149‑1 (MQ=255)                            gATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACTGCCCATTCGGCGTAGCCTACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGt                                                                                                               <  1:103608/148‑1 (MQ=255)                              tGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATc                                                                                                            <  3:264386/149‑1 (MQ=255)                               gCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATc                                                                                                            >  8:193305/1‑148 (MQ=255)                                    cccTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACt                                                                                                       <  4:97279/148‑1 (MQ=255)                                    cccTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACt                                                                                                       <  2:56987/148‑1 (MQ=255)                                     ccTCATCAGTGAAGAAGGCGTGAGCGTTCAGGTGGACCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGAACTGGATCAGTTCCACGAACAGCTCGGCCAGCTGGGCAACACCCTCTACCACGACGACCGTATCCAACTg                                                                                                      >  4:233469/1‑148 (MQ=255)                                             gTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCca                                                                                             >  4:24120/1‑149 (MQ=255)                                                aagaagGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCcaca                                                                                           <  2:232838/148‑1 (MQ=255)                                                aagaagGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAg                                                                                          >  5:258278/1‑149 (MQ=255)                                                 agaagGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAgg                                                                                         >  8:149809/1‑149 (MQ=255)                                                  gaagGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGc                                                                                        <  4:97025/149‑1 (MQ=255)                                                     ggCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTa                                                                                     <  4:300558/149‑1 (MQ=255)                                                       cGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACt                                                                                   <  7:149809/149‑1 (MQ=255)                                                        gggAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACCAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACtt                                                                                  <  6:230944/147‑1 (MQ=255)                                                              gTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTcc                                                                            <  2:218792/149‑1 (MQ=255)                                                               tGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTccc                                                                           <  7:193305/149‑1 (MQ=255)                                                                gCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAAc                                                                                                        <  7:101425/119‑1 (MQ=255)                                                                gCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAAc                                                                                                        >  8:101425/1‑119 (MQ=255)                                                                gCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTccc                                                                           >  4:203843/1‑148 (MQ=255)                                                                 cAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGTCCCACAGGCGTACTTCATTCCCaa                                                                         <  7:200334/149‑1 (MQ=255)                                                                   ggTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACt                                                                       <  3:233469/149‑1 (MQ=255)                                                                       gCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTAc                                                                                    >  8:133989/1‑132 (MQ=255)                                                                       gCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTAc                                                                                    <  7:133989/132‑1 (MQ=255)                                                                        cccTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAg                                                                  <  6:288019/149‑1 (MQ=255)                                                                              aCGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAg                                                            <  6:258278/149‑1 (MQ=255)                                                                                  cccATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGccc                                                        >  2:237701/1‑149 (MQ=255)                                                                                                ccAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGc                                           >  5:153051/1‑148 (MQ=255)                                                                                                       gCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAgg                                   <  6:44529/149‑1 (MQ=255)                                                                                                       gCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAgg                                   <  3:24120/149‑1 (MQ=255)                                                                                                          gcagcaGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCac                                >  6:121413/1‑149 (MQ=255)                                                                                                          ccagctggccgagcaggtcgtgcaactgctccagtgcctgctgGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAggcgc                                >  5:283066‑M2/44‑147 (MQ=255)                                                                                                           cagctggccgagcaggtcgtgcaactgctccagtgcctgctgGGCACCACCCTGTACCACGCCGACCATATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGaa                                             <  4:54175‑M2/93‑1 (MQ=255)                                                                                                           cagctggccgagcaggtcgtgcaactgctccagtgcctgctgGGCACCACCCTGTACCACGCCGACCATATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGaa                                             >  3:54175‑M2/43‑135 (MQ=255)                                                                                                             GCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCACTGa                             >  6:153051‑M1/1‑149 (MQ=255)                                                                                                                ggCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCactgactg                          <  3:203843/149‑1 (MQ=255)                                                                                                                 gCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCACTGACTgc                         <  6:16214/149‑1 (MQ=255)                                                                                                                 gCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCACTGACTgc                         <  4:91285/149‑1 (MQ=255)                                                                                                                       gAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCACTGACTGCAGCAcg                   >  3:246839/1‑149 (MQ=255)                                                                                                                            gTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCACTGACTGCAGCACGCGTg               >  3:61851/1‑148 (MQ=255)                                                                                                                                cACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCACTGACTGCAGCACGCGTGCAGgc          >  1:84218/1‑149 (MQ=255)                                                                                                                                        gCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCACTGACTGCAGCACGCGTGCAGGCGCATCcgc  >  7:174011/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                        GCACGCGGTCCTGCGCGAGCAGCGCTTGATGCTTACCCTCAGCAGTGAAGAAGGCGTGAGCGTGCAGGTGGCCCTGGACGGCCCATTCGGCGTAGCCAACAAGCCGCAGCAGGCACTGGAGCAGTTGCACGACCTGCTCGGCCAGCTGGGCACCACCCTGTACCACGCCGACCGTATCGAACTGGATGCCCCACAGGCGTACTTCATTCCCAACTCGCAGCTCAAGGCCCTGCGCCGCGAAGCCATCGAGGCACTGACTGCAGCACGCGTGCAGGCGCATCCGC  >  NC_002947/3967076‑3967359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.