New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4243965	39 (0.750)	4 (0.080)	4/254	NT	9.5%	coding (1056/1191 nt)	aruH	arginine‑‑pyruvate transaminase AruH
	?	NC_002947	= 4244002	39 (0.780)					coding (1019/1191 nt)	aruH	arginine‑‑pyruvate transaminase AruH

GGACGGTGTGCTCACGCATCCGTCTGCCCGCGCATCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCGCAC  >  NC_002947/4243819‑4244112                                                                                                                                                    |                                                                                                                                                    ggACGGTGTGCTCACGCATCCGTCTGCCCGCGCATCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCgg                                                                                                                                                    >  1:54226/1‑148 (MQ=255)    cGGTGTGCTCACGCATCCGTCTGCCCGCGCATCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAg                                                                                                                                                >  7:101087/1‑149 (MQ=255)         tgCTAACGCATCCGTCTGCCCGCGCATCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTAGTTACCCAGCACCAGGCCCAGGCGGATATGCACGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAATCACCg                                                                                                                                           >  3:203094/1‑149 (MQ=255)              aCGCATCCGTCTGCCCGCGCATCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCG                                                                                                                                                     <  6:994‑M1/134‑1 (MQ=255)              aCGCATCCGTCTGCCCGCGCATCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCG                                                                                                                                                     >  5:994‑M1/1‑134 (MQ=255)              aCGCATCCGTCTGCCCGCGCATCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TACGGCCGAATGCCTCGCCGGCAAGCACCGACACg                                                                                                                                      >  1:191014/1‑149 (MQ=255)               cGCATCCGTCTGCCCGCGCATCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGc                                                                                                                                     >  4:52452/1‑149 (MQ=255)                      gTCTGCCCGCGCATCAGTTAGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACAGACACGCACTGGCt                                                                                                                              >  8:215372/1‑149 (MQ=255)                          gCCCGCGCATCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTc                                                                                                                           >  7:272366/1‑148 (MQ=255)                            ccGCGCATCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCaa                                                                                                                        >  6:189315/1‑149 (MQ=255)                            ccGCGCATCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCa                                                                                                                         >  2:120565/1‑148 (MQ=255)                                gaaTCAGTTCGCCGGCGCAGCGTGCAATGCGCTGGCAGGCATCTACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGTATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAgg                                                                                                                    <  4:203094/147‑1 (MQ=255)                                  aTCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTa                                                                                                                  <  1:120565/149‑1 (MQ=255)                                   tCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAg                                                                                                                 >  1:201249/1‑149 (MQ=255)                                      gTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTcg                                                                                                              <  6:68488‑M2/149‑3 (MQ=255)                                      gTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTcg                                                                                                              >  2:54226‑M2/1‑147 (MQ=255)                                       ttCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGactacctgttggacagccagggcgtgtcggtgcttgccgg                                                                                                             >  8:105346‑M1/1‑109 (MQ=255)                                           ccGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGactacctgttggacagccagggcgtgtcggtgcttgccggcgag                                                                                                         <  7:105346‑M1/149‑45 (MQ=255)                                                  aGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTgg                                                                                                  <  5:68488/149‑1 (MQ=255)                                                   gCGGTCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTggg                                                                                                 <  7:215372/149‑1 (MQ=255)                                                   gCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCACCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGT‑CAACAGGTAGTCGGCGAAGGCCTGGgc                                                                                                <  2:40007/149‑1 (MQ=255)                                                    cGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGgc                                                                                                <  2:288279/149‑1 (MQ=255)                                                       gCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGgcgc                                                                                              >  5:148511/1‑148 (MQ=255)                                                       gCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGgcgc                                                                                              >  5:271668/1‑148 (MQ=255)                                                         aaTGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTaa                                                                                           >  3:159076/1‑149 (MQ=255)                                                              gcTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCg                                                                                      <  3:52452/149‑1 (MQ=255)                                                                  gcaggcaTCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGttt                                                                                  >  4:100329/1‑149 (MQ=255)                                                                        aTCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGCATAGGCCCGATTCCAACGCCGCCAACCCCCGACCCGCCCTGGCTGGCCAACAGGAATACGGCGAAGGCATGGCCCCTACCCCCGGTTACACgc                                                                             >  1:253311/1‑148 (MQ=255)                                                                        aTCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGCTTTCACGGa                                                                            >  7:3687/1‑149 (MQ=255)                                                                               aGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAg                                                                     <  4:159076/149‑1 (MQ=255)                                                                                            ccAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGactacctgttggacagccagggcgtgtcggtgcttgccggcgaggca                                                                                                      >  3:151186‑M1/1‑56 (MQ=255)                                                                                            ccAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGactacctgttggacagccagggcgtgtcggtgcttgccggcgaggca                                                                                                      <  4:151186‑M1/103‑48 (MQ=255)                                                                                            ccAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAg                                                                     <  5:91940/136‑1 (MQ=255)                                                                                            ccAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAg                                                                     >  6:91940/1‑136 (MQ=255)                                                                                                 aCCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTAACGGATGTCGAGCATCACGAACATGccac                                                    >  6:64208/1‑148 (MQ=255)                                                                                                     ggcccaggcGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCg                                               <  2:253311/149‑1 (MQ=255)                                                                                                       cccaggcGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGGGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCggg                                             <  8:3687/149‑1 (MQ=255)                                                                                                       cccaggcGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCggg                                             >  1:51127/1‑149 (MQ=255)                                                                                                       cccaggcGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCggg                                             >  2:251886/1‑149 (MQ=255)                                                                                                       cccaggcGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCggg                                             <  3:100329/149‑1 (MQ=255)                                                                                                              ggATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAAc                                      <  2:201249/149‑1 (MQ=255)                                                                                                               gATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACg                                     >  2:11200/1‑149 (MQ=255)                                                                                                                 tatGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGcc                                   <  8:101087/149‑1 (MQ=255)                                                                                                                    gCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGCCACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCCCCATCGGGCTTCAACGCCtt                                 >  5:267670/1‑148 (MQ=255)                                                                                                                            gcgc‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCgg                        <  6:271668/149‑1 (MQ=255)                                                                                                                                   gggCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGACGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGcc                  <  2:191014/149‑1 (MQ=255)                                                                                                                                      ccGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGc               >  6:1164/1‑149 (MQ=255)                                                                                                                                           tGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTcggcgaggcattcggccctagcgctgccgggcatatccgcctgggcctggtgctgg                                                        <  4:151186‑M2/103‑57 (MQ=255)                                                                                                                                           tGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTcggcgaggcattcggccctagcgctgccgggcatatccgcctgggcctggtgctgg                                                        >  3:151186‑M2/1‑47 (MQ=255)                                                                                                                                              cTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAAGAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGtt       <  2:204817/149‑1 (MQ=255)                                                                                                                                              cTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTcggcgaggcattcggccctagcgctgccgggcatatccgcctgggcctggtgctgggtaacgaggcgctggtcgatgcctgccagcgcattgcccgctgcgccgg       <  7:105346‑M2/149‑106 (MQ=255)                                                                                                                                               tCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTc      >  2:266716/1‑149 (MQ=255)                                                                                                                                                 gCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCg     <  1:266716/148‑1 (MQ=255)                                                                                                                                                  ccGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTcggcgaggcattcggccctagcgctgccgggcatatccgcctgggcctggtgctgggtaacgaggcgctggtcgatgcctgccagcgcattgcccgctgcgccggcgaa   >  8:105346‑M2/1‑40 (MQ=255)                                                                                                                                                  ccGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCTGGCCCGGGCAGCCGGCCAGCTGTTCGca   <  1:186198/149‑1 (MQ=255)                                                                                                                                                   cGactacctgttggacagccagggcgtgtcggtgcttgccggcgaggcattcggccctagcgctgccgggcatatccgcctgggcctggtgctgggtaacgaggcgctggtcgatgcctgccagcgcattgcccgctgcgccggcgaac  <  6:68488‑M1/149‑148 (MQ=255)                                                                                                                                                   cGactacctgttggacagccagggcgtgtcggtgcttgccggcgaggcattcggccctagcgctgccgggcatatccgcctgggcctggtgctgggtaacgaggcgctggtcgatgcctgccagcgcattgcccgctgcgccggcgaac  >  2:54226‑M1/1‑2 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GGACGGTGTGCTCACGCATCCGTCTGCCCGCGCATCAGTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCGCAC  >  NC_002947/4243819‑4244112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.