New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4243965	39 (0.750)	4 (0.080)	4/254	NT	9.5%	coding (1056/1191 nt)	aruH	arginine‑‑pyruvate transaminase AruH
	?	NC_002947	= 4244002	39 (0.780)					coding (1019/1191 nt)	aruH	arginine‑‑pyruvate transaminase AruH

GTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCGCACACCAGATCGCGCCGCTGGCGGTAGGCTTCGCGCATG  >  NC_002947/4243856‑4244148                                                                                                                                                    |                                                                                                                                                   gTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTcg                                                                                                                                                  >  2:54226‑M2/1‑147 (MQ=255) gTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTcg                                                                                                                                                  <  6:68488‑M2/149‑3 (MQ=255)             aGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTgg                                                                                                                                      <  5:68488/149‑1 (MQ=255)              gCGGTCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTggg                                                                                                                                     <  7:215372/149‑1 (MQ=255)              gCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCACCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGT‑CAACAGGTAGTCGGCGAAGGCCTGGgc                                                                                                                                    <  2:40007/149‑1 (MQ=255)               cGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGgc                                                                                                                                    <  2:288279/149‑1 (MQ=255)                  gCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGgcgc                                                                                                                                  >  5:148511/1‑148 (MQ=255)                  gCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGgcgc                                                                                                                                  >  5:271668/1‑148 (MQ=255)                    aaTGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTaa                                                                                                                               >  3:159076/1‑149 (MQ=255)                         gcTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCg                                                                                                                          <  3:52452/149‑1 (MQ=255)                             gcaggcaTCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGttt                                                                                                                      >  4:100329/1‑149 (MQ=255)                                   aTCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGCATAGGCCCGATTCCAACGCCGCCAACCCCCGACCCGCCCTGGCTGGCCAACAGGAATACGGCGAAGGCATGGCCCCTACCCCCGGTTACACgc                                                                                                                 >  1:253311/1‑148 (MQ=255)                                   aTCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGCTTTCACGGa                                                                                                                >  7:3687/1‑149 (MQ=255)                                          aGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAg                                                                                                         <  4:159076/149‑1 (MQ=255)                                                       ccAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAg                                                                                                         <  5:91940/136‑1 (MQ=255)                                                       ccAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAg                                                                                                         >  6:91940/1‑136 (MQ=255)                                                            aCCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTAACGGATGTCGAGCATCACGAACATGccac                                                                                        >  6:64208/1‑148 (MQ=255)                                                                ggcccaggcGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCg                                                                                   <  2:253311/149‑1 (MQ=255)                                                                  cccaggcGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGGGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCggg                                                                                 <  8:3687/149‑1 (MQ=255)                                                                  cccaggcGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCggg                                                                                 >  1:51127/1‑149 (MQ=255)                                                                  cccaggcGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCggg                                                                                 <  3:100329/149‑1 (MQ=255)                                                                  cccaggcGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCggg                                                                                 >  2:251886/1‑149 (MQ=255)                                                                         ggATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAAc                                                                          <  2:201249/149‑1 (MQ=255)                                                                          gATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACg                                                                         >  2:11200/1‑149 (MQ=255)                                                                            tatGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGcc                                                                       <  8:101087/149‑1 (MQ=255)                                                                               gCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGCCACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCCCCATCGGGCTTCAACGCCtt                                                                     >  5:267670/1‑148 (MQ=255)                                                                                       gcgc‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCgg                                                            <  6:271668/149‑1 (MQ=255)                                                                                              gggCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGACGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGcc                                                      <  2:191014/149‑1 (MQ=255)                                                                                                 ccGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGc                                                   >  6:1164/1‑149 (MQ=255)                                                                                                      tGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTcggcgaggcattcggccctagcgctgccgggcatatccgcctgggcctggtgctgg                                                                                            >  3:151186‑M2/1‑47 (MQ=255)                                                                                                      tGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTcggcgaggcattcggccctagcgctgccgggcatatccgcctgggcctggtgctgg                                                                                            <  4:151186‑M2/103‑57 (MQ=255)                                                                                                         cTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAAGAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGtt                                           <  2:204817/149‑1 (MQ=255)                                                                                                         cTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTcggcgaggcattcggccctagcgctgccgggcatatccgcctgggcctggtgctgggtaacgaggcgctggtcgatgcctgccagcgcattgcccgctgcgccgg                                           <  7:105346‑M2/149‑106 (MQ=255)                                                                                                          tCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTc                                          >  2:266716/1‑149 (MQ=255)                                                                                                            gCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCg                                         <  1:266716/148‑1 (MQ=255)                                                                                                             ccGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTcggcgaggcattcggccctagcgctgccgggcatatccgcctgggcctggtgctgggtaacgaggcgctggtcgatgcctgccagcgcattgcccgctgcgccggcgaa                                       >  8:105346‑M2/1‑40 (MQ=255)                                                                                                             ccGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCTGGCCCGGGCAGCCGGCCAGCTGTTCGca                                       <  1:186198/149‑1 (MQ=255)                                                                                                                     cACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCGCACACCAgct                               >  4:54749/1‑147 (MQ=255)                                                                                                                          acacGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCGCACACCAGATCgcgc                          <  6:148511/149‑1 (MQ=255)                                                                                                                              gCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCGCACACCAGCTCGCGCCGCt                      >  3:246993/1‑149 (MQ=255)                                                                                                                                    gCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCGCACACCAGATCGCGCCGCTGGCGGt                >  3:169604/1‑149 (MQ=255)                                                                                                                                      tGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCGCACACCAGATCGCGCCGCTGGCGGTAg              >  1:177391/1‑149 (MQ=255)                                                                                                                                      tGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCGCACACCAGATCGCGCCGCTGGCGGTAg              >  1:172291/1‑149 (MQ=255)                                                                                                                                           aaCAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCGCACACCAGATCGCGCCGCTGGCGGTAGGCTTc         <  4:169604/149‑1 (MQ=255)                                                                                                                                             cAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCGCACACCAGATCGCGCCGCTGGCGGTAGGCTTcgc       <  5:189315/149‑1 (MQ=255)                                                                                                                                                gTAGTCGGAGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGATTCAACGCCTTCAGGACCGGGCAGCCGGCCAGCTGTTCGCACACAACATCGCTCCGATGGCGGTAGGATTCgcgc     >  8:281392/1‑148 (MQ=255)                                                                                                                                                  aGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGACCGGGCAGCCGGCCAGCTGTTCGCACACCAGATCGCGCCGCTGGCGGTAGGCTTCGCGCATg  >  3:252896/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GTTCGCCGGCGCAGCGGGCAATGCGCTGGCAGGCATCGACCAGCGCCTCGTTACCCAGCACCAGGCCCAGGCGGATATGCCCGGCAGCGC‑TAGGGCCGAATGCCTCGCCGGCAAGCACCGACACGCCCTGGCTGTCCAACAGGTAGTCGGCGAAGGCCTGGGCGCTAACGCCGGTTTCACGGATGTCGAGCATCACGAACATGCCACCATCGGGCTTCAACGCCTTCAGGCCCGGGCAGCCGGCCAGCTGTTCGCACACCAGATCGCGCCGCTGGCGGTAGGCTTCGCGCATG  >  NC_002947/4243856‑4244148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.