New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4926807	41 (0.790)	3 (0.060)	3/256	NT	6.6%	coding (1075/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase
	?	NC_002947	= 4926840	45 (0.900)					coding (1042/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase

AGAGCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCC  >  NC_002947/4926681‑4926954                                                                                                                               |                                                                                                                                                     agagCACCGACATGACCGCCTTCAAGGAAGTTGCCCCCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGCCGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGc                                                                                                                                >  3:69416/1‑148 (MQ=255)  gagCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGc                                                                                                                                >  5:316557/1‑147 (MQ=255)         gataTGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGc                                                                                                                       <  6:263779/146‑1 (MQ=255)          aCATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAgg                                                                                                                                                  >  4:27511/1‑122 (MQ=255)          aCATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAgg                                                                                                                                                  <  3:27511/122‑1 (MQ=255)            aTGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCATCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCtt                                                                                                                    >  8:57566/1‑149 (MQ=255)               aCCGCCTTCAAGGATGTTGGCTCCGAGAATGGGAACGAAAGGGAGGATCAGAGCGATCAGGCTGAGGACGTCCATGAGACGCACGCCTCCACGAGGTGCTTGGCGATTTCGTGGAGGCTGTACACGGCATC‑CGCCAGGTTGGGCTTGa                                                                                                                  <  2:93927/148‑1 (MQ=255)               aCCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTgac                                                                                                                 >  1:100861‑M2/1‑146 (MQ=255)                ccGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGt                                                                                                                           <  8:38447/138‑1 (MQ=255)                ccGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGt                                                                                                                           >  7:38447/1‑138 (MQ=255)                 cGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGTCGATTTCGTCaaggcgaacctggcggatgccgtgtacagcctcgacga                                                                                                                <  1:240667‑M1/149‑39 (MQ=255)                 cGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGc                                                                                                                       >  8:89594/1‑141 (MQ=255)                 cGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGc                                                                                                                       <  7:89594/141‑1 (MQ=255)                  gCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGAt                                                                                                              <  5:21096/149‑1 (MQ=255)                   ccTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATg                                                                                                             <  8:176033/149‑1 (MQ=255)                      tCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGc                                                                                                           >  4:158984/1‑148 (MQ=255)                       cAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCa                                                                                                         >  6:99481/1‑149 (MQ=255)                          ggAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATgg                                                                                                      >  8:225854/1‑149 (MQ=255)                          ggAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATgg                                                                                                      <  5:5287/149‑1 (MQ=255)                            aaGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGc                                                                                                    <  8:208944/149‑1 (MQ=255)                              gTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCAt                                                                                                  >  1:283657/1‑149 (MQ=255)                               ttGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCaaggcgaacctggcggatgccgtgtacagcctcgac                                                                                                                  >  7:110696‑M1/1‑97 (MQ=255)                               ttGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCaaggcgaacctggcggatgccgtgtacagcctcgac                                                                                                                  <  8:110696‑M1/133‑37 (MQ=255)                                      cGACAATGGCAACGAAAGGAAGGATCAGAACGATCAGGCTGAGGACGTCCATCAGACTATAGCCTCCACCAGGTTCTTGCCGATTTCGTCGATGCTGTACACGTCATC‑CGCCAGGTTCGACTTTACGATGGCCATGGGCATGCCATaaa                                                                                          <  4:202539/149‑1 (MQ=255)                                        aCAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATc                                                                                        <  1:147962/149‑1 (MQ=255)                                                      aGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCtt                                                                           >  7:205922/1‑148 (MQ=255)                                                            gATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTg                                                                    <  6:316557/149‑1 (MQ=255)                                                             aTCAGACCGATCAGGCGGAGGACGTCCCTCAGACGCACGCCTCCACCAGGTTCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTgg                                                                   <  4:246009/149‑1 (MQ=255)                                                              tCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTggg                                                                  <  8:205922/149‑1 (MQ=255)                                                                  aCCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCGTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCca                                                              >  6:68008/1‑149 (MQ=255)                                                                  aCCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCTca                                                              >  3:106954/1‑149 (MQ=255)                                                                         aGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCGTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGtg                                                       <  5:68008/149‑1 (MQ=255)                                                                             tGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGtgctgc                                                   >  3:290963/1‑149 (MQ=255)                                                                                 gACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATGACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGccccc                                               >  1:272312/1‑149 (MQ=255)                                                                                 gACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGAGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGccccc                                               >  3:312126/1‑149 (MQ=255)                                                                                     tCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCTCACACCGTGCTGCCCCCCTGc                                           <  4:106954/149‑1 (MQ=255)                                                                                         tCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATCAGGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCTTAAATCACGCAGCTGGCTTCAACCTGGGCCCCCACCGTGCTGCCCCCATGAtt                                         >  1:93440/1‑148 (MQ=255)                                                                                                 acgcCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGgcgc                               >  8:15213/1‑149 (MQ=255)                                                                                                     cTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTACGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCATGAGCAGgcgcgcgc                           >  6:286644/1‑149 (MQ=255)                                                                                                        caccaGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGcc                          <  2:3037/147‑1 (MQ=255)                                                                                                            aGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTcgcg                    <  6:330826/149‑1 (MQ=255)                                                                                                            aGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTcgcg                    >  5:330826/1‑149 (MQ=255)                                                                                                             ggTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCgg                   <  7:57566/149‑1 (MQ=255)                                                                                                             ggTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCgg                   <  7:225854/149‑1 (MQ=255)                                                                                                                    gCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCgg            >  7:120605/1‑149 (MQ=255)                                                                                                                    gCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCgg            >  6:37146/1‑149 (MQ=255)                                                                                                                     ccGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCgg            <  2:272312/148‑1 (MQ=255)                                                                                                                           tcgtcgAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTgacgaaatcgacaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgtcggtggcaacttccttgaaggcg     <  1:240667‑M2/149‑112 (MQ=255)                                                                                                                            cgtcgAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCAt     <  2:283657/148‑1 (MQ=255)                                                                                                                             gtcgAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTgacgaaatcggcaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgtcggtggcaa                   <  8:110696‑M2/133‑98 (MQ=255)                                                                                                                             gtcgAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTgacgaaatcggcaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgtcggtggcaa                   >  7:110696‑M2/1‑36 (MQ=255)                                                                                                                             gtcgAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGc   >  6:110848/1‑149 (MQ=255)                                                                                                                             gTCaaggcgaacctggcggatgccgtgtacagcctcgacgaaatcggcaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgtcggtggcaacttccttgaaggcggt    >  1:100861‑M1/1‑3 (MQ=255)                                                                                                                              tcgAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGcc  >  7:284270/1‑149 (MQ=255)                                                                                                                               |                                                                                                                                                     AGAGCACCGACATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCC  >  NC_002947/4926681‑4926954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.