New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4926807	41 (0.790)	3 (0.060)	3/256	NT	6.6%	coding (1075/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase
	?	NC_002947	= 4926840	45 (0.900)					coding (1042/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase

ATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCGACAACACCTT  >  NC_002947/4926692‑4926978                                                                                                                                                      |                                                                                                                                           aTGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCATCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCtt                                                                                                                                            >  8:57566/1‑149 (MQ=255)    aCCGCCTTCAAGGATGTTGGCTCCGAGAATGGGAACGAAAGGGAGGATCAGAGCGATCAGGCTGAGGACGTCCATGAGACGCACGCCTCCACGAGGTGCTTGGCGATTTCGTGGAGGCTGTACACGGCATC‑CGCCAGGTTGGGCTTGa                                                                                                                                          <  2:93927/148‑1 (MQ=255)    aCCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTgac                                                                                                                                         >  1:100861‑M2/1‑146 (MQ=255)       gCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGAt                                                                                                                                      <  5:21096/149‑1 (MQ=255)        ccTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATg                                                                                                                                     <  8:176033/149‑1 (MQ=255)           tCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGc                                                                                                                                   >  4:158984/1‑148 (MQ=255)            cAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCa                                                                                                                                 >  6:99481/1‑149 (MQ=255)               ggAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATgg                                                                                                                              <  5:5287/149‑1 (MQ=255)               ggAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATgg                                                                                                                              >  8:225854/1‑149 (MQ=255)                 aaGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGc                                                                                                                            <  8:208944/149‑1 (MQ=255)                   gTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCAt                                                                                                                          >  1:283657/1‑149 (MQ=255)                           cGACAATGGCAACGAAAGGAAGGATCAGAACGATCAGGCTGAGGACGTCCATCAGACTATAGCCTCCACCAGGTTCTTGCCGATTTCGTCGATGCTGTACACGTCATC‑CGCCAGGTTCGACTTTACGATGGCCATGGGCATGCCATaaa                                                                                                                  <  4:202539/149‑1 (MQ=255)                             aCAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATc                                                                                                                <  1:147962/149‑1 (MQ=255)                                           aGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCtt                                                                                                   >  7:205922/1‑148 (MQ=255)                                                 gATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTg                                                                                            <  6:316557/149‑1 (MQ=255)                                                  aTCAGACCGATCAGGCGGAGGACGTCCCTCAGACGCACGCCTCCACCAGGTTCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTgg                                                                                           <  4:246009/149‑1 (MQ=255)                                                   tCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTggg                                                                                          <  8:205922/149‑1 (MQ=255)                                                       aCCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCGTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCca                                                                                      >  6:68008/1‑149 (MQ=255)                                                       aCCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCTca                                                                                      >  3:106954/1‑149 (MQ=255)                                                              aGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCGTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGtg                                                                               <  5:68008/149‑1 (MQ=255)                                                                  tGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGtgctgc                                                                           >  3:290963/1‑149 (MQ=255)                                                                      gACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATGACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGccccc                                                                       >  1:272312/1‑149 (MQ=255)                                                                      gACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGAGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGccccc                                                                       >  3:312126/1‑149 (MQ=255)                                                                          tCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCTCACACCGTGCTGCCCCCCTGc                                                                   <  4:106954/149‑1 (MQ=255)                                                                              tCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATCAGGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCTTAAATCACGCAGCTGGCTTCAACCTGGGCCCCCACCGTGCTGCCCCCATGAtt                                                                 >  1:93440/1‑148 (MQ=255)                                                                                      acgcCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGgcgc                                                       >  8:15213/1‑149 (MQ=255)                                                                                          cTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTACGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCATGAGCAGgcgcgcgc                                                   >  6:286644/1‑149 (MQ=255)                                                                                             caccaGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGcc                                                  <  2:3037/147‑1 (MQ=255)                                                                                                 aGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTcgcg                                            >  5:330826/1‑149 (MQ=255)                                                                                                 aGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTcgcg                                            <  6:330826/149‑1 (MQ=255)                                                                                                  ggTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCgg                                           <  7:57566/149‑1 (MQ=255)                                                                                                  ggTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCgg                                           <  7:225854/149‑1 (MQ=255)                                                                                                         gCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCgg                                    >  6:37146/1‑149 (MQ=255)                                                                                                         gCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCgg                                    >  7:120605/1‑149 (MQ=255)                                                                                                          ccGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCgg                                    <  2:272312/148‑1 (MQ=255)                                                                                                                tcgtcgAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTgacgaaatcgacaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgtcggtggcaacttccttgaaggcg                             <  1:240667‑M2/149‑112 (MQ=255)                                                                                                                 cgtcgAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCAt                             <  2:283657/148‑1 (MQ=255)                                                                                                                  gtcgAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTgacgaaatcggcaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgtcggtggcaa                                           >  7:110696‑M2/1‑36 (MQ=255)                                                                                                                  gtcgAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTgacgaaatcggcaagcacctggtggaggcgtgcgtctgatggacgtcctcagcctgatcggtctgatcctggctttcgttgccattgtcggtggcaa                                           <  8:110696‑M2/133‑98 (MQ=255)                                                                                                                  gtcgAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGc                           >  6:110848/1‑149 (MQ=255)                                                                                                                   tcgAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGcc                          >  7:284270/1‑149 (MQ=255)                                                                                                                     gAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCgg                        >  7:50707/1‑149 (MQ=255)                                                                                                                      aGGCTGTACACGGCATC‑CGCCAGGTTCGCCTAGACGATGGCCATGGGAATGCCATAAATCACGCAGCTGGCTTCATACTGGGCCCACACCGTCCTGCACCCCTGCTGGAGCAGGCGCGCGCCCTCGCGGCCATCGGAGCCCATGCCgct                       >  8:268421/1‑147 (MQ=255)                                                                                                                           gTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGca                  >  6:60211/1‑149 (MQ=255)                                                                                                                            tACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGcac                 <  2:93440/149‑1 (MQ=255)                                                                                                                            tACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGcac                 >  1:159810/1‑149 (MQ=255)                                                                                                                               acGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCACCCATGCCGGTGAGcaccac              >  1:220033/1‑149 (MQ=255)                                                                                                                               acGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGAGGCCATCGGCGCCCATGCCGGTGAGcaccac              >  7:229767/1‑149 (MQ=255)                                                                                                                                cGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCaccacc             <  3:158984/149‑1 (MQ=255)                                                                                                                                  gCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCGa           >  1:237651/1‑149 (MQ=255)                                                                                                                                            aGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCGACAACACCtt  <  8:120605/149‑1 (MQ=255)                                                                                                                                            aGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCGACAACACCtt  <  4:290963/149‑1 (MQ=255)                                                                                                                                              gTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCGACAacac     >  1:107074/1‑144 (MQ=255)                                                                                                                                              gTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCGACAacac     <  2:107074/144‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                           ATGACCGCCTTCAAGGAAGTTGCCACCGACAATGGCAACGAAAGCCAGGATCAGACCGATCAGGCTGAGGACGTCCATCAGACGCACGCCTCCACCAGGTGCTTGCCGATTTCGTCGAGGCTGTACACGGCATC‑CGCCAGGTTCGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAGCTGGCTTCATCCTGGGCCCACACCGTGCTGCCCCCCTGCTTGAGCAGGCGCGCGCCCTCGCGGCCATCGGCGCCCATGCCGGTGAGCACCACCGACAACACCTT  >  NC_002947/4926692‑4926978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.