| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5378985 | 48 (0.920) | 4 (0.080) | 3/246 | NT | 8.5% | coding (570/1674 nt) | recN | DNA repair/recombination protein |
| ? | NC_002947 | = 5379036 | 42 (0.870) | coding (621/1674 nt) | recN | DNA repair/recombination protein | |||||
CCACCGTCGCCTGCTTGACGAGTATGCCGGCGCCGTCGACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCG > NC_002947/5378838‑5379132 | ccaccGTCGCCTGCTTGACGAGTATGCCGGCGCCGTCGACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCa < 3:152712/149‑1 (MQ=255) gCTTGACGAGTATGCCGGCGCCGTCGACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTg > 1:249654/1‑148 (MQ=255) cTTGACGAGTATGCCGGCGCCGTCGACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTgg > 5:237824/1‑148 (MQ=255) gACGAGTATGCCGGCGCCGTCGACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCACTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGgaag < 1:129194/148‑1 (MQ=255) gAGTATGCCGGCGCCGTCGACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACt < 2:210016/149‑1 (MQ=255) gAGTATGCCGGCGCCGTCGACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCCCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACt > 4:171554/1‑149 (MQ=255) tgTATGCCGGCGCCGGCGACCTGGGCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTg < 2:249654/148‑1 (MQ=255) ccGGCGCCGTCGACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAAc > 7:54021/1‑149 (MQ=255) ccGGCGCCGTCGACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAAc > 4:257300/1‑149 (MQ=255) cGGCGCCGTCGACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGCCGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAAcc > 3:173127/1‑149 (MQ=255) cgcCGTCGACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCg < 6:288844/149‑1 (MQ=255) gACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTgg < 6:305891/148‑1 (MQ=255) aCCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGATGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGc < 2:1167/149‑1 (MQ=255) ccTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCg < 3:59799/149‑1 (MQ=255) cTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGa < 3:257300/149‑1 (MQ=255) gCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGc < 3:235393/148‑1 (MQ=255) ccGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCcagttcgtgctcgcccaggccgaggttgtccagttcttccagctgg > 8:5328‑M1/1‑103 (MQ=255) ccGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCAc > 1:245674/1‑148 (MQ=255) ccGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCACCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGTACAACCTCGGCCTGGGCGCGCAc > 5:180200/1‑148 (MQ=255) ccGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACAAGCAGCGCGCCCGCCACCAGCTGCTCcagttcgtgctcgcccaggccgaggttgtccagttcttccagctgg > 7:79895‑M1/1‑103 (MQ=255) gCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGaa < 4:300391/149‑1 (MQ=255) gCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGaa < 3:85311/149‑1 (MQ=255) gCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGaa < 3:80818/149‑1 (MQ=255) gTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGga > 6:237824‑M2/1‑147 (MQ=255) ttGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGgagcagctg < 2:237203‑M2/149‑10 (MQ=255) gCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCcagttcgtgctcgcccaggccgaggttgtccagttcttccagctggtaactgagcagctgg < 7:5328‑M1/148‑62 (MQ=255) gCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACAAGCAGCGCGCCCGCCACCAGCTGCTCcagttcgtgctcgcccaggccgaggttgtccagttcttccagctggtaactgagcagctg < 8:79895‑M1/147‑61 (MQ=255) cAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTggaa < 4:195249/149‑1 (MQ=255) gCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTggaaca < 2:298409/149‑1 (MQ=255) gcTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTggaacaggaaca > 4:18987/1‑148 (MQ=255) cTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAAcaca < 6:201677/149‑1 (MQ=255) aTCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAAc > 1:118013/1‑149 (MQ=255) aTCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAAc > 2:58383/1‑149 (MQ=255) aCCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGAc < 8:52816/149‑1 (MQ=255) aCCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCACCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGAc < 3:171554/149‑1 (MQ=255) ccGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGAc > 5:298126/1‑147 (MQ=255) ccGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCa > 5:43899/1‑149 (MQ=255) tggagcTCCTCTCCAACTATGGCGACGAGCAGAGTGACGGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGAAAACCTCGGCCTGGGCGAGCACGAACTGTATCAGATGTAACAGGAAAACAAGAACCTGACCAGCGCCGAAGcc < 8:155253/149‑1 (MQ=255) gagcGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAacac > 8:285319/1‑123 (MQ=255) gagcGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAacac < 7:285319/123‑1 (MQ=255) gcCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACAAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTAGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACAAGCGCCGaa > 3:75272/1‑140 (MQ=255) cAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAgc < 7:121967/127‑1 (MQ=255) cAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAgc > 8:121967/1‑127 (MQ=255) cAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCa < 1:58383/146‑1 (MQ=255) cAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCt > 3:202447/1‑149 (MQ=255) cAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCt < 1:237203/149‑1 (MQ=255) cAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCt > 7:197017/1‑149 (MQ=255) gccgaGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGATCTGGACACCCTCGGCCTGGGGGAGCTCGAACTGGAGCCGCTGGAACCGGACCACCAGAACCTGACCCGCGCCGACGCCCTGTTCGGCATCTGCCGCCAGGt > 5:184082/3‑149 (MQ=255) agcagcGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATc < 2:118013/149‑1 (MQ=255) agcGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGAc < 3:18987/149‑1 (MQ=255) cgcgcCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCa < 8:54021/149‑1 (MQ=255) gcccgccACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTg > 7:298983/1‑149 (MQ=255) gccACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGc < 8:298983/149‑1 (MQ=255) ccaGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGgagcagctggtggcgggcgcgctgctcgtcgcccgagttggagaggcgctccagctccaggcgggtctgattccagcgcttggctgc < 7:5328‑M2/148‑88 (MQ=255) ccaGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGa > 7:133407/1‑147 (MQ=255) caGCTGCTCcagttcgtgctcgcccaggccgaggttgtccagttcttccagctggtaactgagcagctggtggcgggcgcgctgctcgtcgcccgagttggagaggcgctccagctccaggcgggtctgattccagcgcttggctgcaa < 2:237203‑M1/149‑141 (MQ=255) caGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGgagcagctggtggcgggcgcgctgcttgtcgcccgagttggagaggcgctccagctccaggcgggtctgattccagcgcttggctgc < 8:79895‑M2/147‑88 (MQ=255) gctgctCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGc > 4:70334/1‑148 (MQ=255) tCcagttcgtgctcgcccaggccgaggttgtccagttcttccagctggtaactgagcagctggtggcgggcgcgctgctcgtcgcccgagttggagaggcgctccagctccaggcgggtctgattccagcgcttggctgcaagctgtac > 6:237824‑M1/1‑2 (MQ=255) | CCACCGTCGCCTGCTTGACGAGTATGCCGGCGCCGTCGACCTGGCCCGCCAGGTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCG > NC_002947/5378838‑5379132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |