New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5378985	48 (0.920)	4 (0.080)	3/246	NT	8.5%	coding (570/1674 nt)	recN	DNA repair/recombination protein
	?	NC_002947	= 5379036	42 (0.870)					coding (621/1674 nt)	recN	DNA repair/recombination protein

GTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAATGTGCTCAGCGCCCTCACCTCCAGCCTCAACCGCCTGGGTGCCGC  >  NC_002947/5378890‑5379182                                                                                                                                                   |                                                                                                                                                   gTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGga                                                                                                                                                  >  6:237824‑M2/1‑147 (MQ=255)        ttGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGgagcagctg                                                                                                                                           <  2:237203‑M2/149‑10 (MQ=255)           cAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTggaa                                                                                                                                        <  4:195249/149‑1 (MQ=255)             gCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTggaaca                                                                                                                                      <  2:298409/149‑1 (MQ=255)                    gcTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTggaacaggaaca                                                                                                                                >  4:18987/1‑148 (MQ=255)                     cTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAAcaca                                                                                                                              <  6:201677/149‑1 (MQ=255)                          aTCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAAc                                                                                                                         >  1:118013/1‑149 (MQ=255)                          aTCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAAc                                                                                                                         >  2:58383/1‑149 (MQ=255)                               aCCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGAc                                                                                                                    <  8:52816/149‑1 (MQ=255)                               aCCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCACCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGAc                                                                                                                    <  3:171554/149‑1 (MQ=255)                                 ccGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGAc                                                                                                                    >  5:298126/1‑147 (MQ=255)                                 ccGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCa                                                                                                                  >  5:43899/1‑149 (MQ=255)                                            tggagcTCCTCTCCAACTATGGCGACGAGCAGAGTGACGGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGAAAACCTCGGCCTGGGCGAGCACGAACTGTATCAGATGTAACAGGAAAACAAGAACCTGACCAGCGCCGAAGcc                                                                                                       <  8:155253/149‑1 (MQ=255)                                              gagcGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAacac                                                                                                                               >  8:285319/1‑123 (MQ=255)                                              gagcGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAacac                                                                                                                               <  7:285319/123‑1 (MQ=255)                                                  gcCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACAAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTAGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACAAGCGCCGaa                                                                                                          >  3:75272/1‑140 (MQ=255)                                                         cAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAgc                                                                                                                >  8:121967/1‑127 (MQ=255)                                                         cAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAgc                                                                                                                <  7:121967/127‑1 (MQ=255)                                                         cAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCa                                                                                             <  1:58383/146‑1 (MQ=255)                                                         cAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCt                                                                                          >  3:202447/1‑149 (MQ=255)                                                         cAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCt                                                                                          >  7:197017/1‑149 (MQ=255)                                                         cAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCt                                                                                          <  1:237203/149‑1 (MQ=255)                                                                   gccgaGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGATCTGGACACCCTCGGCCTGGGGGAGCTCGAACTGGAGCCGCTGGAACCGGACCACCAGAACCTGACCCGCGCCGACGCCCTGTTCGGCATCTGCCGCCAGGt                                                                                >  5:184082/3‑149 (MQ=255)                                                                       agcagcGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATc                                                                            <  2:118013/149‑1 (MQ=255)                                                                          agcGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGAc                                                                         <  3:18987/149‑1 (MQ=255)                                                                            cgcgcCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCa                                                                       <  8:54021/149‑1 (MQ=255)                                                                               gcccgccACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTg                                                                    >  7:298983/1‑149 (MQ=255)                                                                                   gccACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGc                                                                <  8:298983/149‑1 (MQ=255)                                                                                       ccaGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGgagcagctggtggcgggcgcgctgctcgtcgcccgagttggagaggcgctccagctccaggcgggtctgattccagcgcttggctgc                                                             <  7:5328‑M2/148‑88 (MQ=255)                                                                                       ccaGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGa                                                              >  7:133407/1‑147 (MQ=255)                                                                                        caGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGgagcagctggtggcgggcgcgctgcttgtcgcccgagttggagaggcgctccagctccaggcgggtctgattccagcgcttggctgc                                                             <  8:79895‑M2/147‑88 (MQ=255)                                                                                          gctgctCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGc                                                          >  4:70334/1‑148 (MQ=255)                                                                                                 aGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCggg                                                  <  4:69015/149‑1 (MQ=255)                                                                                                 aGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCggg                                                  <  6:298126/149‑1 (MQ=255)                                                                                                 aGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCgg                                                   <  6:43899/148‑1 (MQ=255)                                                                                                      ccAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGgagcagctggtggcgggcgcgctgcttgtcgcccgagttggagaggcgctccagctccaggcgggtctgattccagcgcttggctgcaagctgtacctggcgg                                             >  7:79895‑M2/1‑46 (MQ=255)                                                                                                      ccAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGgagcagctggtggcgggcgcgctgctcgtcgcccgagttggagaggcgctccagctccaggcgggtctgattccagcgcttggctgcaagctgtacctggcgg                                             >  8:5328‑M2/1‑46 (MQ=255)                                                                                                      ccAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAAt                                              <  8:197017/148‑1 (MQ=255)                                                                                                             gaagaaCTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAACAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAATGTGCTCAg                                      >  1:259806/1‑149 (MQ=255)                                                                                                                  aCTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAATGTGCTCAGCGccc                                 <  4:202447/149‑1 (MQ=255)                                                                                                                    tGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGACCACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCAGCCAGGTCATCGCCCAGTGCAGCGCAAGCGATTCGGGCAATGTGCTCAGCGCCCt                                >  8:139356/1‑148 (MQ=255)                                                                                                                    tGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAATGTGCTCAGCGCCCt                                >  2:97340/1‑148 (MQ=255)                                                                                                                         aaCCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAATGTGCTCAGCGCCCTCACCTc                          >  1:13020/1‑149 (MQ=255)                                                                                                                           ccTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGAc                                                                                                                    <  2:271587/57‑1 (MQ=255)                                                                                                                           ccTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGAc                                                                                                                    >  1:271587/1‑57 (MQ=255)                                                                                                                             tCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAATGTGCTCAGCGCCCTCACCTCGAGc                      >  5:303989/1‑149 (MQ=255)                                                                                                                             tCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAATGTGCTCAGCGCCCTCACCTCCAGc                      >  2:19146/1‑149 (MQ=255)                                                                                                                                  cTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAATGTGCTCAGCGCCCTCACCTCCAGCCTCaa                 >  3:295933/1‑149 (MQ=255)                                                                                                                                           cACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAATGTGCTCAGCGCCCTCACCTCCAGCCTCAACCGCCTggg        >  7:244058/1‑149 (MQ=255)                                                                                                                                              gAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAATGTGCTCAGCGCCCTCACCTCCAGCCTCAACCGCCTGGGTgc     >  5:226141/1‑149 (MQ=255)                                                                                                                                                 cTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAATGTGCTCAGCGCCCTCACCTCCAGCCTCAACCGCCTGGGTgccgc  <  2:13020/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GTACAGCTTGCAGCCAAGCGCTGGAATCAGACCCGCCTGGAGCTGGAGCGCCTCTCCAACTCGGGCGACGAGCAGCGCGCCCGCCACCAGCTGCTCAGTTACCAGCTGGAAGAACTGGACAACCTCGGCCTGGGCGAGCACGAACTGGAGCAGCTGGAACAGGAACACAAGAACCTGACCAGCGCCGAAGCCCTGTTCGGCATCTGCCGCCAGGTCATCGACCAGTGCAGCGAAAGCGATTCGGGCAATGTGCTCAGCGCCCTCACCTCCAGCCTCAACCGCCTGGGTGCCGC  >  NC_002947/5378890‑5379182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.