New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5851995 =	46 (0.880)	3 (0.060)	3/250	NT	6.7%	coding (299/1089 nt)	PP_5129	hypothetical protein
	?	NC_002947	5852035 =	40 (0.820)					coding (259/1089 nt)	PP_5129	hypothetical protein

GTAGGCTCGAAAACGAAAACATCCGCGTCCAGATCACCCAGCACCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTAACAAACATCTTCCCGGTAACTACCTCTTTC  >  NC_002947/5851848‑5852138                                                                                                                                                     |                                                                                                                                                cgttttgtcgagaactatcgccagtatgctgctgcctgcaaagcgaaagaggtagttaccgggaagatgtttgttactgaagtgcgtgagctggacggtccacgctggattgtgaattttccaaccaagcggcattggcgctcaccttc                                                                                                                                                 >  4:114034‑M1/149‑149 (MQ=255) cgttttgtcgagaactatcgccagtatgctgctgcctgcaaagcgaaagaggtagttaccgggaagatgtttgttactgaagtgcgtgagctggacggtccacgctggattgtgaattttccaaccaagcggcattggcgctcaccttc                                                                                                                                                 >  7:76793‑M1/149‑149 (MQ=255) cgttttgtcgagaactatcgccagtatgctgctgcctgcaaagcgaaagaggtagttaccgggaagatgtttgttactgaagtgcgtgagctggacggtccacgctggattgtgaattttccaaccaagcggcattggcgctcaccttc                                                                                                                                                 <  4:52878‑M1/1‑1 (MQ=255) cgttttgtcgagaactatcgccagtatgctactgcctgcaaagcgaaagaggtagttaccgggaagatgtttgttactgaagtgcgtgagctggacggtccacgctggattgtgaattttccaaccaagcggcattggcgctcaccttc                                                                                                                                                 <  1:28443‑M1/1‑1 (MQ=255)     ttgtcgagaactatcgccagtatgctgctgcctgcaaagcgaaagaggtagttaccgggaagatgtttgttactgaagtgcgtgagctggacggtccacgctggattgtgaattttccaaccaagcggcattggcgctcaccttCGCa                                                                                                                                              >  2:39058‑M1/145‑148 (MQ=255)         gaaaacgaaaacATCCGCGTCCAGATCACCCAGCACCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCAt                                                                                                                                        <  4:308681/149‑1 (MQ=255)            aacgaaaacATCCGCGTCCAGATCACCCAGCACCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGaa                                                                                                                                     <  5:296298/149‑1 (MQ=255)             acgaaaacATCCGCGTCCAGATCACCCAGCACCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAg                                                                                                                                    >  7:153021/1‑149 (MQ=255)                    cATCCTCGTCCAGATCAACCAGCACCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTcg                                                                                                                             <  5:120919/149‑1 (MQ=255)                       ccGCGTCCAGATCACCCAGCACCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTcgac                                                                                                                           >  1:87094/1‑148 (MQ=255)                            tCCAGATCACCCAGCACCCTCTGAATCTGTTCTCGTACCGCAGCCCAAAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATc                                                                                                                       >  1:71277/1‑148 (MQ=255)                               aGATCACCCAGCACCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGcc                                                                                                                  >  3:189445/1‑149 (MQ=255)                                    aCCCAGCACCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGAttt                                                                                                             <  5:293962/149‑1 (MQ=255)                                     cccAGCACCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCAATACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTg                                                                                                            >  4:5737/1‑149 (MQ=255)                                         gCACCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGaa                                                                                                        <  2:46783/149‑1 (MQ=255)                                         gCACCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGaa                                                                                                        <  2:51470/149‑1 (MQ=255)                                          agcgaaagaggtagttaccgggaagatgtttgttactgaagtgcgtgagctggacggtccacgctggattgtgaattttccaaccaagcggcattggcgctcaccttCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGaa                                                                                                        >  5:148314‑M1/108‑149 (MQ=255)                                           aCCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTgc                                                                                                                                                 <  6:310451/106‑1 (MQ=255)                                           aCCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTgc                                                                                                                                                 >  5:310451/1‑106 (MQ=255)                                              aaagaggtagttaccgggaagatgtttgttactgaagtgcgtgagctggacggtccacgctggattgtgaattttccaaccaagcggcattggcgctcaccttCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAg                                                                                                       <  6:281540‑M1/43‑1 (MQ=255)                                              aaagaggtagttaccgggaagatgtttgttactgaagtgcgtgagctggacggtccacgctggattgtgaattttccaaccaagcggcattggcgctcaccttCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAg                                                                                                       >  5:281540‑M1/104‑146 (MQ=255)                                               tctGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGaa                                                                                                        >  2:58052/1‑143 (MQ=255)                                               tctGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGaa                                                                                                        <  1:58052/143‑1 (MQ=255)                                                      cTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAAt                                                                                           >  6:221040/1‑149 (MQ=255)                                                              gTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTTGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCttg                                                                                   <  3:151452/149‑1 (MQ=255)                                                              gTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTTGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCttg                                                                                   >  4:151452/1‑149 (MQ=255)                                                              gTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCtt                                                                                    <  2:87094/148‑1 (MQ=255)                                                                 ccGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGGTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCttggt                                                                                 <  4:189445/148‑1 (MQ=255)                                                                  cGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGcttgcttg                                                                               >  4:148170/1‑149 (MQ=255)                                                                  cGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCttggttg                                                                               >  1:317834/1‑149 (MQ=255)                                                                    tgtttgttactgaagtgcgtgagctggacggtccacgctggattgtgaattttccaaccaagcggcattggcgctcaccttc                                                                                                                                                 >  3:198481‑M1/82‑82 (MQ=255)                                                                    tgtttgttactgaagtgcgtgagctggacggtccacgctggattgtgaattttccaaccaagcggcattggcgctcaccttc                                                                                                                                                 <  4:198481‑M1/1‑1 (MQ=255)                                                                    cAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGa                                                                             <  2:71277/149‑1 (MQ=255)                                                                         c‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAAtt                                                                        >  7:96943/1‑149 (MQ=255)                                                                           ctgACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTc                                                                       <  7:287009/147‑1 (MQ=255)                                                                            aGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTca                                                                      <  2:87275/149‑1 (MQ=255)                                                                              aCAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTc                                                                       >  8:287009/1‑146 (MQ=255)                                                                                  cccTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATc                                                                 >  6:26025/1‑148 (MQ=255)                                                                                  cccTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATc                                                                 >  2:288535/1‑148 (MQ=255)                                                                                             cAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCg                                                     >  2:186555/1‑149 (MQ=255)                                                                                                   cAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGc                                               >  2:28443/1‑149 (MQ=255)                                                                                                             gATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACtt                                     <  1:288535/149‑1 (MQ=255)                                                                                                               tAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCa                                                 >  1:19720/1‑135 (MQ=255)                                                                                                               tAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCa                                                 <  2:19720/135‑1 (MQ=255)                                                                                                               tAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCa                                   <  3:148170/149‑1 (MQ=255)                                                                                                                 gCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGt                                 <  2:317834/149‑1 (MQ=255)                                                                                                                        aTGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTaacaaa                           >  3:286905/1‑148 (MQ=255)                                                                                                                        aTGCCACCTGGTTATTGATAATGAAGTTGCGCAAAGCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTaacaaac                          <  6:330101/149‑1 (MQ=255)                                                                                                                            caacTGGTTATTGATAATGAAGTTGCGAAAATCATGAAGTCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGTTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTAACAAACATCt                      <  5:274737/146‑1 (MQ=255)                                                                                                                               cTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTAACAAACATCTTcc                   <  4:286905/149‑1 (MQ=255)                                                                                                                                  gTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTAACAAACATCTTCCCg                 <  1:186555/148‑1 (MQ=255)                                                                                                                                  gTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTAACAAACATCTTCCCg                 <  5:221040/148‑1 (MQ=255)                                                                                                                                    tATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTAACAAACATCTTCCCGGt               >  7:114028/1‑148 (MQ=255)                                                                                                                                     aTTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTAACAAACATCTTCCCGGTaa             >  4:44386/1‑149 (MQ=255)                                                                                                                                          tAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCAAGCGTGGACCGTCCAGCTCACGCACTTCAGTAACAAACATCTTCCCGGTAACTAcc        >  8:247770/1‑149 (MQ=255)                                                                                                                                            aTGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTAACAAACATCTTCCCGGTAACTACctc      >  3:52878/1‑149 (MQ=255)                                                                                                                                             tGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGAc                                                       >  6:98344/1‑99 (MQ=255)                                                                                                                                               aaGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTAACAAACATCTTCCCGGTAACTACCTCtt    <  8:114028/148‑1 (MQ=255)                                                                                                                                                aGTTCCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTAACAAACATCTTCCCGGTAACTACCTCTTTc  <  8:153021/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                GTAGGCTCGAAAACGAAAACATCCGCGTCCAGATCACCCAGCACCCTCTGAATCTGTTCTCGTACCGCAGCCC‑AAGACAACCCTCCATTACCAGCACCAAGTGGAGGGATAGCAATCGATGCCACCTGGTTATTGATAATGAAGTTGCGCAAATCATGAAGGCCCTCGACGATCCAGCCGATTTGCGAAGGTGAGCGCCAATGCCGCTTGGTTGGAAAATTCACAATCCAGCGTGGACCGTCCAGCTCACGCACTTCAGTAACAAACATCTTCCCGGTAACTACCTCTTTC  >  NC_002947/5851848‑5852138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.