New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2460351 =	47 (0.900)	5 (0.100)	4/250	NT	10.7%	coding (453/480 nt)	PP_2153	hypothetical protein
	?	NC_002947	2460402 =	39 (0.800)					coding (402/480 nt)	PP_2153	hypothetical protein

TTCGCCCTTGGCGCCGCGATGGCCGTAGATCAGGGTCACGTTCGTTCCTTCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCGGCATCAGCACCATTTTCACTTTCACCCGGGTACCGG  >  NC_002947/2460254‑2460550                                                                                                                                                     |                                                                                                                                                     ttCGCCCTTGGCGCCGCGATGGCCGTAGATCAGGGTCACGTTCGTTCCTTCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGt                                                                                                                                                      >  2:141912/1‑149 (MQ=255)     ctgcgcggcaaggtcacccattgcgaccctcgcccgaagggcggcttcgaggtcggtaccgagttcatcgacatgaccgacgcccaacgacaaCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTg                                                                                                                                                    >  5:57445‑M1/94‑147 (MQ=255)          ggCGCCGCGATGGCCGTAGATCAGGGTCACGTTCGTTCCTTCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTg                                                                                                                                              <  5:224259/148‑1 (MQ=255)           gcgcCGCGATGGCCGTAGATCAGGGTCACGTTCGTTCCTTCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTggg                                                                                                                                            >  6:144948/1‑149 (MQ=255)                       ccGTAGATCAGGGTCACGTTCGTTCCTTCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTAGTTCAGTTCCAGCTGCTGTCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCATTTGTCGTTGGGCGTCGGTCATGt                                                                                                                                >  8:126147/1‑149 (MQ=255)                         gTAGATCAGGGTCACGTTCGTTCCTTCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTc                                                                                                                               >  6:77084/1‑148 (MQ=255)                            gATCAGGGTCACGTTCGTTCCTTCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGAt                                                                                                                            <  1:141912/148‑1 (MQ=255)                                        gttcgttcCTTCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTAcc                                                                                                                >  3:306092/1‑148 (MQ=255)                                         ttcgttcCTTCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGa                                                                                                              >  7:234447/1‑149 (MQ=255)                                             ttcCTTCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGGTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGGCAGCAGTTGTCGTTCGGCGTCGGTCATGTCTATGACATCGGTACCGACCTc                                                                                                          >  8:109985/1‑149 (MQ=255)                                                 ttCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAg                                                                                                      >  7:136883/1‑149 (MQ=255)                                                  tCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGaa                                                                                                       <  7:161603/147‑1 (MQ=255)                                                  tCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGaa                                                                                                       <  7:157144/147‑1 (MQ=255)                                                  tCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGaa                                                                                                       >  8:157144/1‑147 (MQ=255)                                                  tCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGaa                                                                                                       >  8:161603/1‑147 (MQ=255)                                                    aaaTCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAgccg                                                                                                   <  5:144948/149‑1 (MQ=255)                                                           ggAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAGCTCGGTACCGACCTCGAAGCCGCCCTCCg                                                                                            >  3:37407/1‑149 (MQ=255)                                                            gAAAAATTGGCCCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTCCCGCCCGCGAAGCCGCCCTCCgg                                                                                           >  2:227196/1‑149 (MQ=255)                                                              aaaaTTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCggg                                                                                          <  4:306092/148‑1 (MQ=255)                                                                       tCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCg                                                                                 >  5:134581/1‑148 (MQ=255)                                                                          ggaggCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAAt                                                                             <  8:136883/149‑1 (MQ=255)                                                                                   gTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCt                                                                    >  6:15458/1‑149 (MQ=255)                                                                                    tCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGCCCtt                                                                   >  8:25702/1‑149 (MQ=255)                                                                                      gTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGc                                                                 <  6:134581/149‑1 (MQ=255)                                                                                        tCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCcg                                                               >  2:241477/1‑149 (MQ=255)                                                                                            ttCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCgca                                                           <  7:126147/149‑1 (MQ=255)                                                                                              ccAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCgcag                                                          >  5:303640/1‑148 (MQ=255)                                                                                               caactgctggcccgatacatcctgcagcgccagcaacaacaacggcgccagcagTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTTCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCgcag                                                          >  5:57445‑M2/55‑147 (MQ=255)                                                                                                aGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGGCGCAATGGGTGACCTTGcc                                                                <  4:246859/140‑1 (MQ=255)                                                                                                 gctgctGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCgcagcag                                                       >  7:16924/1‑148 (MQ=255)                                                                                                  ctgctggcccgatacatcctgcagcgccagcaacaacaacggcgccagcagTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTc                                                                                  <  5:79537‑M2/69‑1 (MQ=255)                                                                                                  ctgctggcccgatacatcctgcagcgccagcaacaacaacggcgccagcagTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTc                                                                                  >  6:79537‑M2/52‑120 (MQ=255)                                                                                                  ctgctggcccgatacatcctgcagcgccagcaacaacaacggcgccagcagTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCgcagcag                                                       >  3:143360‑M2/52‑147 (MQ=255)                                                                                                        GCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGt                                               >  5:77084‑M1/1‑149 (MQ=255)                                                                                                        GCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGACGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGt                                               >  1:227196‑M1/1‑149 (MQ=255)                                                                                                          gcCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTgg                                             <  1:241477/149‑1 (MQ=255)                                                                                                          gcCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTgg                                             <  6:303640/149‑1 (MQ=255)                                                                                                          ccgatacatcctgcagcgccagcaacaacaacggcgccagcagTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTgg                                             <  4:143360‑M2/106‑1 (MQ=255)                                                                                                           ccGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAgg                                                                                     <  2:113585/108‑1 (MQ=255)                                                                                                           ccGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAgg                                                                                     >  1:113585/1‑108 (MQ=255)                                                                                                              ttgttgttgCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGgcgc                                         >  8:210695/1‑149 (MQ=255)                                                                                                                   gttgCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCgg                                     >  5:30996/1‑148 (MQ=255)                                                                                                                          gcgcTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCGGCATCAg                               <  3:48314/147‑1 (MQ=255)                                                                                                                           cgcTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCGGCATCAGCAc                            >  6:79416/1‑149 (MQ=255)                                                                                                                             cTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCGGCATCAGCACCa                          <  7:109985/149‑1 (MQ=255)                                                                                                                                   gATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCGGCATCAGCACCATtttca                    >  6:319905/1‑149 (MQ=255)                                                                                                                                   gATGTATCGGGCCAGAAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACTGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCGGCATCAGCACCATtttca                    >  6:151036/1‑149 (MQ=255)                                                                                                                                       tATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGATCTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCGGCATCAGCACCATtttcacttt                <  4:37407/149‑1 (MQ=255)                                                                                                                                        aTCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGcgcgcg                                      <  6:71554/126‑1 (MQ=255)                                                                                                                                        aTCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGcgcgcg                                      >  5:71554/1‑126 (MQ=255)                                                                                                                                             gccagcagTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCGGCATCAGCACCATTTTCACTTTCACCCg          <  7:95908‑M2/141‑1 (MQ=255)                                                                                                                                                     ttGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCGGCATCAGCACCATtttcac                   >  2:286583/1‑132 (MQ=255)                                                                                                                                                     ttGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCGGCATCAGCACCATtttcac                   <  1:286583/132‑1 (MQ=255)                                                                                                                                                     ttGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCGGCATCAGCACCATTTTCACTTTCACCCGGGTACCgg  >  7:376/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TTCGCCCTTGGCGCCGCGATGGCCGTAGATCAGGGTCACGTTCGTTCCTTCAAATCAGGGAAAAATTGGCTCAGGAGGCGGGGTCGTTCAGTTCCAGCTGCTGGCGCCGTTGTTGTTGCTGGCGCTGCAGGATGTATCGGGCCAGCAGTTGTCGTTGGGCGTCGGTCATGTCGATGAACTCGGTACCGACCTCGAAGCCGCCCTCCGGGCGAGGGTCGCAATGGGTGACCTTGCCGCGCAGCAGCAGGCCGTGGGCGCGCGGCATCAGCACCATTTTCACTTTCACCCGGGTACCGG  >  NC_002947/2460254‑2460550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.