New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2593807 =	58 (1.110)	4 (0.080)	4/254	NT	7.2%	coding (305/411 nt)	PP_5509	hypothetical protein
	?	NC_002947	2593864 =	47 (0.950)					coding (362/411 nt)	PP_5509	hypothetical protein

TTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGCGTGTGGACAACGGAGTCATCGTCCGGTCCCGAGACAA  >  NC_002947/2593720‑2594011                                                                                                                                                 |                                                                                                                                                    ttttGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCCCGCCCAGCCTACGTTGCACCGCGAGCcagcta                                                                                                                                                  >  3:89532/1‑148 (MQ=255)   aggcgcggaggccgttgggctggagtcgtcatggcttacctacgggagcggaagctggagaagctgctggtgcgatagctgtagcTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCcag                                                                                                                                                     >  8:105886‑M1/86‑143 (MQ=255)   aggcgcggaggccgttgggctggagtcgtcatggcttacctacgggagcggaagctggagaagctgctggtgcgatagctgtagcTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCcag                                                                                                                                                     <  7:105886‑M1/58‑1 (MQ=255)    tGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCcagctacag                                                                                                                                               <  2:138970/148‑1 (MQ=255)     gggCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCcagctacagc                                                                                                                                              <  3:10617/148‑1 (MQ=255)         aGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCg                                                                                                                                         >  6:99935/1‑149 (MQ=255)          gTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGc                                                                                                                                        <  5:99935/149‑1 (MQ=255)                cGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACca                                                                                                                                    <  3:223804/147‑1 (MQ=255)                  gCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACcagcag                                                                                                                                >  1:131095/1‑149 (MQ=255)                        gCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTtctc                                                                                                                          <  3:137706/149‑1 (MQ=255)                             ggCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCt                                                                                                                     <  8:113861/149‑1 (MQ=255)                                  tCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGc                                                                                                                >  8:11851/1‑149 (MQ=255)                                          accaccATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCTCGCCCAGCCTTCGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAg                                                                                                        <  7:35330/149‑1 (MQ=255)                                          aacaacaTCGTGAAGAACAACAAGACCAAGAACAGAGAGACCAGGGTGGCTCCGAGTCAGGCCTATGTGGCTCAAGGCGCAGCCTACGTTGCACCGCGAGCAATCTACAGCTATCGCAGCAGCAGCTTCTGCAGCTTCCGCTCCCGTAg                                                                                                        <  2:270223/144‑1 (MQ=255)                                           ccaccaTCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAgg                                                                                                       >  2:184662/1‑149 (MQ=255)                                            caccaTCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAgg                                                                                                       >  6:254305/1‑148 (MQ=255)                                                ctCGTGAACAACACCCCGACCAACACCCGCGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGc                                                                                                  <  6:270161/148‑1 (MQ=255)                                                   gTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCAt                                                                                               <  6:172901/149‑1 (MQ=255)                                                        caacaCCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATgacga                                                                                          <  5:254305/149‑1 (MQ=255)                                                        caacaCCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATgacga                                                                                          >  1:317852/1‑149 (MQ=255)                                                             ccacGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCa                                                                                     <  4:258770/149‑1 (MQ=255)                                                              cacGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTc                                                                                                                   <  7:188087/118‑1 (MQ=255)                                                              cacGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTc                                                                                                                   >  8:188087/1‑118 (MQ=255)                                                              cacGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTccc                                                                                                            >  1:43673/1‑125 (MQ=255)                                                              cacGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTccc                                                                                                            <  2:43673/125‑1 (MQ=255)                                                                cGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGcc                                                                                  >  6:200707/1‑149 (MQ=255)                                                                     accacCCGAGCGACCACCGTGGCTCCGCGTCCGGCATATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCACCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACg                                                                             <  4:89532/147‑1 (MQ=255)                                                                     aaCACCCGAGCGACCACTGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACg                                                                             <  6:165535/149‑1 (MQ=255)                                                                     aaCACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACg                                                                             <  7:248666/149‑1 (MQ=255)                                                                     aaCACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACg                                                                             <  2:317852/149‑1 (MQ=255)                                                                      acacCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACgg                                                                            >  7:83135/1‑149 (MQ=255)                                                                       cacCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGc                                                                           >  5:31384/1‑149 (MQ=255)                                                                            gAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCcg                                                                      >  3:183222/1‑149 (MQ=255)                                                                            gAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCcg                                                                      >  5:201106/1‑149 (MQ=255)                                                                             aGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCcgc                                                                     <  3:241726/149‑1 (MQ=255)                                                                                gACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAACCATGACGACTCCAGCCCAACGGCCTCCGCGcc                                                                  >  6:306461/1‑149 (MQ=255)                                                                                 accaccGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAACCATGACGACTCCAGCCCAACGGCCTCCGCGCCt                                                                 <  5:306461/149‑1 (MQ=255)                                                                                     ccGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGaaa                                                             <  7:29325/149‑1 (MQ=255)                                                                                       ctggctcgcggtgcaacgtaggctgggcgtggagccacataggccggacgcggagccaGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCt                                                                 >  8:105886‑M2/59‑143 (MQ=255)                                                                                       ctggctcgcggtgcaacgtaggctgggcgtggagccacataggccggacgcggagccaGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCt                                                                 <  7:105886‑M2/85‑1 (MQ=255)                                                                                        tggctcgcggtgcaacgtaggctgggcgtggagccacataggccggacgcggagccaGCTACAGCTATCGCGCCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGaa                                                          >  3:231733‑M2/58‑149 (MQ=255)                                                                                            TCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGt                                                      <  1:187841‑M1/149‑1 (MQ=255)                                                                                             CCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTc                                                     <  6:38642‑M1/149‑1 (MQ=255)                                                                                                     ggCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCa                                             >  8:37351/1‑149 (MQ=255)                                                                                                           tgtgGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGa                                         <  5:200707/147‑1 (MQ=255)                                                                                                           tgtgGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGc                                       >  4:24406/1‑149 (MQ=255)                                                                                                           tgtgGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGc                                       <  6:201106/149‑1 (MQ=255)                                                                                                                cTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGCGtgtg                                  <  3:24406/149‑1 (MQ=255)                                                                                                                cTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGACCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGCGtgtg                                  <  1:184662/149‑1 (MQ=255)                                                                                                                 tCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACg                                                                             >  6:74267/1‑105 (MQ=255)                                                                                                                 tCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACg                                                                             <  5:74267/105‑1 (MQ=255)                                                                                                                 tCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGCGtgtg                                  >  8:52625/1‑148 (MQ=255)                                                                                                                         cAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGCGTGTGGACAACGGa                         <  7:52625/149‑1 (MQ=255)                                                                                                                         cAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGCGTGTGGACAACGGa                         <  8:83135/149‑1 (MQ=255)                                                                                                                                    ggacgcggagccaGCTACAGCTATCGCTCCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGCGTGTGGACAACGGAGTCATCGTCCg              <  4:231733‑M2/136‑1 (MQ=255)                                                                                                                                     cACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGCGTGTGGACAACGGAGTCATCGTCCgg             >  8:143729/1‑149 (MQ=255)                                                                                                                                          cgAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGCGTGTGGACAACGGAGTCATCGTCCGGTCCCg        <  6:31384/149‑1 (MQ=255)                                                                                                                                                 gctacagctaTCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGCGTGTGGACAACGGAGTCATCGTCCGGTCCCGAGacaa  >  6:277334/1‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCGGCCTATGTGGCTCCACGCCCAGCCTACGTTGCACCGCGAGCCAGCTACAGCTATCGCACCAGCAGCTTCTCCAGCTTCCGCTCCCGTAGGTAAGCCATGACGACTCCAGCCCAACGGCCTCCGCGCCTGAAAGAACTGTCCTTGCGCATTGAGCGTGTGGACAACGGAGTCATCGTCCGGTCCCGAGACAA  >  NC_002947/2593720‑2594011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.