New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2844866 = | 50 (0.960) | 3 (0.060) | 3/250 | NT | 6.4% | coding (883/1029 nt) | PP_2496 | hypothetical protein |
? | NC_002947 | 2844913 = | 41 (0.840) | coding (836/1029 nt) | PP_2496 | hypothetical protein |
GGGCACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAGCGCCTCATGCCACTGCACCTTGCGTTCAGCCAGGTGGC > NC_002947/2844767‑2845054 | gggCACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATAGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTc < 4:48345/148‑1 (MQ=255) cACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTa > 5:205898/1‑148 (MQ=255) cACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTAc < 1:46865/149‑1 (MQ=255) ccTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGc > 5:60661/1‑149 (MQ=255) gCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑t < 3:166433/149‑1 (MQ=255) cGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑Tg > 2:92049/1‑148 (MQ=255) aCCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACt < 1:32777/149‑1 (MQ=255) cAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTc < 8:273523/131‑1 (MQ=255) cAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTc > 7:273523/1‑131 (MQ=255) gCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTgcg > 8:65493/1‑149 (MQ=255) aGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAgc < 4:267087/149‑1 (MQ=255) cGGTATTCGGTGCTGCGTGCCCGCCGCTGGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTc > 1:185618/1‑149 (MQ=255) gTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGt > 2:235833/1‑149 (MQ=255) tATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGtt < 5:243963/149‑1 (MQ=255) tATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGtt < 2:163973/149‑1 (MQ=255) ctgcGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCt < 6:194035/148‑1 (MQ=255) gTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTcc > 4:145609/1‑149 (MQ=255) ccgccgCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCa < 7:65493/149‑1 (MQ=255) cgccgcTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAg < 4:33511/149‑1 (MQ=255) cgccgcTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAg < 6:60661/149‑1 (MQ=255) cTCGTGATCGACGTAGTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCGAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTgg < 5:76332/128‑1 (MQ=255) cTCGTGATAGACGTACTCGGTTACGGCATTGAGCAGACCCAAGGCCGTGACGAGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTAAAGCTCC‑‑AGCACTTTGCGCAGCGCGCGCTCGTAgg > 6:76332/1‑128 (MQ=255) gTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCgg > 5:148012/1‑149 (MQ=255) aTCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTc < 3:145609/148‑1 (MQ=255) cTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGttt > 7:297244/1‑149 (MQ=255) cTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGttt > 1:90838/1‑149 (MQ=255) tCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTc > 2:209773/1‑149 (MQ=255) ggTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCg > 7:205220/1‑148 (MQ=255) ggTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCg > 6:146812/1‑148 (MQ=255) ttACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGcac < 2:90838/149‑1 (MQ=255) ttACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGca > 7:51178/1‑148 (MQ=255) aTTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGt < 8:51178/149‑1 (MQ=255) aTTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGt > 2:46884/1‑149 (MQ=255) aTTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGt > 2:225607/1‑149 (MQ=255) ttGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGtt > 8:88902/1‑149 (MQ=255) ttGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGtt < 5:22085/149‑1 (MQ=255) aGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCAtc > 8:94673/1‑146 (MQ=255) aGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATgaa < 6:205898/149‑1 (MQ=255) cccAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCGAGCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATgaagaa < 1:235833/149‑1 (MQ=255) cAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCCGGTGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGaagaag > 1:256917/1‑149 (MQ=255) aggccgtggtcgtggcagccagctggactccgcacgcggcacggcctTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGcc > 4:147829‑M2/48‑148 (MQ=255) AGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGcc < 6:187496‑M1/148‑1 (MQ=255) GGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCa > 5:187496‑M1/1‑149 (MQ=255) gccgtggtcgtggcagccagctggactccgcacgcggcacggcctTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAg > 2:282187‑M2/46‑149 (MQ=255) ccgtggtcgtggcagccagctggactccgcacgcggcacggcctTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAgc > 2:163920‑M2/45‑149 (MQ=255) GTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAgcgc > 2:185618‑M1/1‑149 (MQ=255) GCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGAGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAGCGCCt < 2:198050‑M1/149‑1 (MQ=255) GCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCA‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GAAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAGCGCCt < 3:200114‑M1/149‑1 (MQ=255) ccGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGTGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAGCGCCTc < 1:198050/149‑1 (MQ=255) cAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAGCGCCTCATGCCACTGCACCt > 7:33855/1‑149 (MQ=255) aGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAGCGCCTCATGCCACTGCAcc > 4:49002/1‑147 (MQ=255) ctggctgCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAGCGCCTCATGCCACTGCACCTTGc < 1:209773/149‑1 (MQ=255) gctgCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAGCGCCACATGCCACTGCACCTTGCGtt < 4:295791/149‑1 (MQ=255) cGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGTGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAGCGCCTCATGCCACTGCACCTTGCGTTCAGCCAg < 6:148012/149‑1 (MQ=255) gACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAGCGCCTCATGCCACTGCACCTTGCGTTCAGCCAgg < 5:146812/149‑1 (MQ=255) acggcctTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAGCGCCTCATGCCACTGCACCTTGCGTTCAGCCAGGTGgc > 2:137461‑M2/8‑149 (MQ=255) | GGGCACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTCGGTTACGGCATTGAGCAGACCCCAGGCCGTGCCGCGTGCGGAGTCCAGCTGGCTGCCACGACCACGGCCTTCGTACAGCTCC‑‑TGCACTTTGCGCAGCGCGCGCTCGTTGGGTAGCTGTTCCG‑GCAGGGCGCCGGTCGGGCTGGTTTCGCACATCACGTTCATGAAGAAGCCCAGCGCCTCATGCCACTGCACCTTGCGTTCAGCCAGGTGGC > NC_002947/2844767‑2845054 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |