New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2845382 =	37 (0.710)	4 (0.080)	4/254	NT	10.3%	coding (367/1029 nt)	PP_2496	hypothetical protein
	?	NC_002947	2845422 =	34 (0.680)					coding (327/1029 nt)	PP_2496	hypothetical protein

CCTGGTCGTTGCCCTTGAGTGCAGCGCCCTGCCCAGTACGCGCCAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATGGCCGATGGCGTCCGACTTGAAGTGCACTGGGCTTTCCATGATCTGC  >  NC_002947/2845277‑2845569                                                                                                                                                  |                                                                                                                                                    ggccatctgggcgcgatccactccttccccgagcagaaggtgctcttccgttcggacaccaagggaccgctgtcagtggtctcgcagcgctatcacaccgtgcagCCTCGGTCAGGTCACGTTAAAATTCGAGTACTTCCCGAGGCTGc                                                                                                                                                  >  1:180816‑M1/106‑149 (MQ=255)        gTTGCCCTTGAGTGCAGCGCCCTGCCCAGTACGCGCCAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGgtgt                                                                                                                                           >  4:45780/1‑149 (MQ=255)        gTTGCCCTTGAGTGCAGCGCCCTGCCCAGTACGCGCCAGCGCCCAGAACTTGCGACCGCCCTTGAGAACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATCAAATTCGAGTACTTCCCGAGGCTGCACGgtgt                                                                                                                                           >  8:302024/1‑149 (MQ=255)           gCCCTTGAGTGCAGCGCCCTGCCCAGTACGCGCCAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGa                                                                                                                                         <  4:240498/148‑1 (MQ=255)                   gTGCAGCGCCCTGCCCAGTACGCGCCAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTg                                                                                                                                 <  3:45780/148‑1 (MQ=255)                    tGCAGCGCCCTGCCCAGTACGCGCCAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGc                                                                                                                                >  3:200611/1‑148 (MQ=255)                    tGCAGCGCCCTGCCCAGTACGCGCCAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGc                                                                                                                                <  4:291607/148‑1 (MQ=255)                        gcgcCCTGCCCAGTACGCGCCAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGAc                                                                                                                           >  6:39168/1‑149 (MQ=255)                             cTGCCCAGTACGCGCCAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCa                                                                                                                         >  8:288719/1‑146 (MQ=255)                             cTGCCCAGTACGCGCCAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCa                                                                                                                         <  7:288719/146‑1 (MQ=255)                                   aGTACGCGCCAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCg                                                                                                                <  1:59132/149‑1 (MQ=255)                                           ccAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTg                                                                                                        <  5:39168/149‑1 (MQ=255)                                            cAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTgg                                                                                                       >  6:119651/1‑149 (MQ=255)                                                 cccAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGc                                                                                                                                <  6:130602/119‑1 (MQ=255)                                                 cccAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGc                                                                                                                                >  5:130602/1‑119 (MQ=255)                                                   cAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGCCCACTGACAGCGGTGCCTTGGTGTCCgc                                                                                                >  4:240196/1‑148 (MQ=255)                                                   cAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCg                                                                                                 >  5:311354/1‑148 (MQ=255)                                                        cTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACgg                                                                                            >  6:256735/1‑148 (MQ=255)                                                              aCCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCa                                                                                     >  3:227757/1‑149 (MQ=255)                                                                cGCCCTTGAGCACGCCAGCGGTCTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCAcc                                                                                   >  7:49843/1‑149 (MQ=255)                                                                 gCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCAcc                                                                                   >  7:226783/1‑148 (MQ=255)                                                                               cAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAg                                                                    <  4:227757/149‑1 (MQ=255)                                                                                  cGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAg                                                                 <  7:18644/149‑1 (MQ=255)                                                                                    gTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTg                                                               <  5:119651/149‑1 (MQ=255)                                                                                       tCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCtt                                                                                 <  5:69908/128‑1 (MQ=255)                                                                                       tCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACAtt                                                                                 >  6:69908/1‑128 (MQ=255)                                                                                             tCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGt                                                                                           >  8:188642/1‑112 (MQ=255)                                                                                             tCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGt                                                                                           <  7:188642/112‑1 (MQ=255)                                                                                               gTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGcc                                                      <  6:311354/147‑1 (MQ=255)                                                                                                   ccGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATg                                                >  5:114135/1‑149 (MQ=255)                                                                                                     ggAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATGGc                                              <  4:200611/149‑1 (MQ=255)                                                                                                      gcagcctcgggaagtactcgaattttaacgtgacctgaccgaggCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTCCCTTGGTGTCCGAACGGAAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATGGcc                                             >  1:180816‑M2/45‑149 (MQ=255)                                                                                                         aCCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATGTCCGAt                                          <  8:226783/149‑1 (MQ=255)                                                                                                          cctcgggaagtactcgaattttatcgtgacctgaccgaggCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCgcgc                                                       <  4:260675‑M2/95‑1 (MQ=255)                                                                                                          cctcgggaagtactcgaattttatcgtgacctgaccgaggCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCgcgc                                                       >  3:260675‑M2/41‑135 (MQ=255)                                                                                                          CCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATGGCCGATg                                         >  5:256735‑M1/1‑149 (MQ=255)                                                                                                           CTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATGGCCGATgg                                        <  8:190058‑M1/149‑1 (MQ=255)                                                                                                           CTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATGGCCGATgg                                        <  8:194990‑M1/149‑1 (MQ=255)                                                                                                                gtagtactcgtattttatcgtgacctgaccgaggCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTTGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATGGCCGATGGCGTcc                                   <  2:180816‑M2/115‑1 (MQ=255)                                                                                                                       aCGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATGGCCGATGGCGTCCGACTTg                             <  7:302024/148‑1 (MQ=255)                                                                                                                          aTAAAATTCGTGTCCTTCCCGAGGCGGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATGGCCGATGGCGTCCGACTTGAAGt                         <  6:55020/149‑1 (MQ=255)                                                                                                                                   gAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGTAGTGGATCGCGCCCAGATGGCCGATGGCGTCCGACTTGAAGTGCACTGGGc                >  6:144700/1‑149 (MQ=255)                                                                                                                                                 gCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATGGCCGATGGCGTCCGACTTGAAGTGCACTGGGCTTTCCATGATCTGc  <  6:114135‑M2/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CCTGGTCGTTGCCCTTGAGTGCAGCGCCCTGCCCAGTACGCGCCAGCGCCCAGAACTTGCGACCGCCCTTGAGCACGCCAGCGGTTTCCAGCTCGTAGCCGGAGACCTCGGTCAGGTCACGATAAAATTCGAGTACTTCCCGAGGCTGCACGGTGTGATAGCGCTGCGAGACCACTGACAGCGGTGCCTTGGTGTCCGAACGGTAGAGCACCTTCTGCTCGGGGAAGGAGTGGATCGCGCCCAGATGGCCGATGGCGTCCGACTTGAAGTGCACTGGGCTTTCCATGATCTGC  >  NC_002947/2845277‑2845569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.