New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3101541 =	47 (0.900)	5 (0.100)	5/254	NT	10.5%	coding (175/807 nt)	PP_2711	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	3101574 =	40 (0.800)					coding (208/807 nt)	PP_2711	short‑chain dehydrogenase/reductase family oxidoreductase

TGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGCGTTGGACGAGCTATTGGACATCAACCTGAAGGCTCCCCTGCAACTGACCCGC  >  NC_002947/3101428‑3101720                                                                                                                                                   |                                                                                                                                                   tccaatagctcgtccaacgcatactcatccagctggtcgagcagagcgaagcgattcacgccagcagcgttgatcagcacattcacagcccccatctcgcgtgcccgctcgatGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATc                                                                                                                                                  >  8:161718‑M1/114‑149 (MQ=255)       aaCAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCgg                                                                                                                                            >  5:79327/1‑149 (MQ=255)         cAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCggg                                                                                                                                           >  6:205895/1‑148 (MQ=255)                 cgcTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGGCAGGGCGCGAACAGGTCATCGAGCGGGCAcgc                                                                                                                                      >  6:207882/1‑145 (MQ=255)                       cGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATggggg                                                                                                                            >  7:169269/1‑149 (MQ=255)                         gTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCt                                                                                                                          >  2:307058/1‑149 (MQ=255)                         gTGCCCAGGTGTTGGCCGTCAGGCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCt                                                                                                                          <  5:26624/149‑1 (MQ=255)                            cccAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCtgt                                                                                                                        >  7:286677/1‑148 (MQ=255)                               aGGTGTTGGCCGTCAGTCGGCATATGTGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAAt                                                                                                                    >  1:175196/1‑149 (MQ=255)                                gctggtcgagcagagcgaagcgattcacgccagcagcgttgatcagcacattcacagcccccatctcgcgtgcccgctcgatGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAg                                                                                                                                               >  3:289942‑M1/83‑121 (MQ=255)                                gctggtcgagcagagcgaagcgattcacgccagcagcgttgatcagcacattcacagcccccatctcgcgtgcccgctcgatGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAg                                                                                                                                               <  4:289942‑M1/39‑1 (MQ=255)                                    ttGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGTTACACTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTAAGGGCGCGAACAGGTCATCGAGCGCGCACGCGAGATGGGGGCTGTGAAtgtgat                                                                                                               >  7:172269/1‑147 (MQ=255)                                     tGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTg                                                                                                              <  5:207882/149‑1 (MQ=255)                                       gCCGTCAGTCGGCATATGGGTAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGAt                                                                                                            <  7:40707/149‑1 (MQ=255)                                               tCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACgctg                                                                                                    >  7:35867/1‑149 (MQ=255)                                                 ggCATTTGGTCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCTGCAGGGCGCTAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACgctgc                                                                                                   <  6:195393/148‑1 (MQ=255)                                                    atatGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCtgt                                                                                                                        >  2:169204/1‑124 (MQ=255)                                                    atatGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCtgt                                                                                                                        <  1:169204/124‑1 (MQ=255)                                                       tGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGt                                                                                             <  8:35867/148‑1 (MQ=255)                                                             aGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAAtcgc                                                                                      >  8:67361/1‑149 (MQ=255)                                                                        cTGATGAACCGGTACCCTGATAGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCt                                                                           >  5:28092/1‑149 (MQ=255)                                                                           atgaACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAAtcg                                                                                       <  6:331712/134‑1 (MQ=255)                                                                           atgaACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAAtcg                                                                                       >  5:331712/1‑134 (MQ=255)                                                                           atgaACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTc                                                                          <  8:169269/147‑1 (MQ=255)                                                                              aaCCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGAcc                                                                      <  5:205895/148‑1 (MQ=255)                                                                               aCCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCTTCAGGGCGCGAACAGGTCATCGAGCGGGCACGAGAGATGGGGTCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAg                                                                    <  2:322610/149‑1 (MQ=255)                                                                                      cccTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGAt                                                              <  2:175196/148‑1 (MQ=255)                                                                                       ccTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCtg                                                                                                                         <  7:294022/88‑1 (MQ=255)                                                                                       ccTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCtg                                                                                                                         >  8:294022/1‑88 (MQ=255)                                                                                       ccTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGAt                                                              >  6:309141/1‑147 (MQ=255)                                                                                       ccTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGa                                                            <  7:67361/149‑1 (MQ=255)                                                                                        cTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAg                                                           >  4:75138/1‑149 (MQ=255)                                                                                           aTCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTAt                                                        <  6:41080/149‑1 (MQ=255)                                                                                              ggcTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGc                                                      <  8:286677/146‑1 (MQ=255)                                                                                                   cgcTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGCGtt                                                   <  2:253267/146‑1 (MQ=255)                                                                                                   cgcTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGCGtt                                                   <  1:307058/146‑1 (MQ=255)                                                                                                   cgcTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGCGtt                                                   <  5:309141/146‑1 (MQ=255)                                                                                                        gCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGc                                                      <  7:93418/138‑1 (MQ=255)                                                                                                        gCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGc                                                      >  8:93418/1‑138 (MQ=255)                                                                                                          aggaggCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGCGTTGGACGAGCTa                                         >  2:165142/1‑149 (MQ=255)                                                                                                          aggaggCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGCGTTGGACGAGCTa                                         >  2:47524/1‑149 (MQ=255)                                                                                                            gaggCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGTTGAGTATGCGTTGGACGAGCTAtt                                       <  6:79327/149‑1 (MQ=255)                                                                                                            ctcgatgacctgttcgcgccctgacgggctgcgcaggtcATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGc                                                                   >  3:289942‑M2/40‑121 (MQ=255)                                                                                                            ctcgatgacctgttcgcgccctgacgggctgcgcaggtcATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGc                                                                   <  4:289942‑M2/82‑1 (MQ=255)                                                                                                               gatgacctgttcgcgccctgacgggctgcgcaggtcATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGCGTTGGACGAGCTATTGGa                                    >  8:161718‑M2/37‑149 (MQ=255)                                                                                                                 acctgttcgcgccctgacgggctgcgaacaggtcATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGAt                                                              >  3:176798‑M2/35‑121 (MQ=255)                                                                                                                 acctgttcgcgccctgacgggctgcgaacaggtcATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGAt                                                              <  4:176798‑M2/87‑1 (MQ=255)                                                                                                                   ACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGCGTTGGACGAGCTATTGGACAt                                 <  2:21378‑M1/148‑1 (MQ=255)                                                                                                                                 tCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGCGTTGGACGAGCTATTGGACATCAACCTGAAGGCTcc                  >  5:132810/1‑149 (MQ=255)                                                                                                                                              aGGTCATCGACCGGGCACGCGAGATCGGGGCTGAGAATGAGCTGATCAACGCTGCTGGCGTGAATCGCATCGCTCTACTCGACCAGCTGGATGAGTATGCGTAGGACGAGCAATTGTACATCAACCTGAACTCTGCCATGCAACAGAcc     >  2:89311/1‑149 (MQ=255)                                                                                                                                               ggtcATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGCGTTGGACGAGCTATTGGACATCAACCTGAAGGCTCCCCTGCAACTGAccc    <  7:161718‑M2/145‑1 (MQ=255)                                                                                                                                                 tcATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGCGTTGGACGAGCTATTGGACATCAACCTGAAGGCTCCCCTGCAACTGACCcgc  >  4:317177‑M2/3‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   TGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGCGAACAGGTCATCGAGCGGGCACGCGAGATGGGGGCTGTGAATGTGCTGATCAACGCTGCTGGCGTGAATCGCTTCGCTCTGCTCGACCAGCTGGATGAGTATGCGTTGGACGAGCTATTGGACATCAACCTGAAGGCTCCCCTGCAACTGACCCGC  >  NC_002947/3101428‑3101720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.