New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4447126 =	33 (0.630)	3 (0.060)	3/256	NT	7.7%	coding (439/1149 nt)	nicC	6‑hydroxynicotinate 3‑monooxygenase
	?	NC_002947	4447167 =	40 (0.800)					coding (398/1149 nt)	nicC	6‑hydroxynicotinate 3‑monooxygenase

GCGACCCAGCCGCTGTAGATCGGCGCTTCAGCCCCCAGCAACTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAAT  >  NC_002947/4447020‑4447314                                                                                                                                                    |                                                                                                                                                    gcgACCCAGCCGCTGTAGATCGGCGCTTCAGCCCCCAGCAACTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGAt                                                                                                                                                    >  2:267008/1‑149 (MQ=255)     cccAGCCGCTGTAGATCGGCGCTTCAGCCCCCAGCAACTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCGAGGCGCACTTGGTCACCTTCGTCGACGATCttt                                                                                                                                                >  4:142619/1‑149 (MQ=255)       gcgctgcctacatcaccatccaccgtggcgacctgcacgccctgcagatcgaggccatccagccgggcaccgtgcacttctgcaagcgcctggaaaagatCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTc                                                                                                                                              >  6:258850‑M1/101‑149 (MQ=255)       cAGCCGCTGTAGATCGGCGCTTCAGCCCCCAGCAACTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTc                                                                                                                                              >  5:320146/1‑149 (MQ=255)                 aGATCGGCGCTTCAGCCCCCAGCAACTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTg                                                                                                                                    >  8:190003/1‑149 (MQ=255)                  taTCGGAGCTTCAGCCCCCAGCAACTCTTCACGGCTCTTCGAGTGGATGCCGTCTGCCCCGATGACGATGTCGGCCAGGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGTACTTGGTCTCCTTCGTCGACGATCTTTTCGATGCGCTTg                                                                                                                                    <  2:288874/147‑1 (MQ=255)                   aTCGGCGCTTCAGCCCCCAGCAACTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGcc                                                                                                                                  >  4:179355/1‑149 (MQ=255)                    tCGGCGCTTCAGCCCCCAGCAACTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCg                                                                                                                                 <  8:164479/149‑1 (MQ=255)                        cgcTTCAGCCCCCAGCAACTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCTAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGt                                                                                                                             <  3:142619/149‑1 (MQ=255)                         tccaccgtggcgacctgcacgccctgcagatcgaggccatccagccgggcaccgtgcacttcggcaagcgcctggaaaagatCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTcgacga                                                                                                                                                     <  8:24752‑M1/42‑1 (MQ=255)                         tccaccgtggcgacctgcacgccctgcagatcgaggccatccagccgggcaccgtgcacttcggcaagcgcctggaaaagatCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTcgacga                                                                                                                                                     >  7:24752‑M1/83‑124 (MQ=255)                                cccccAGCATCTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTg                                                                                                                     <  5:85375/149‑1 (MQ=255)                                   ccAGCAACTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTTGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGccc                                                                                                                  <  3:139526/149‑1 (MQ=255)                                   ccAGCAACTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCTACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGccc                                                                                                                  >  2:68962/1‑149 (MQ=255)                                   ccAGCAACTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGccc                                                                                                                  >  3:241778/1‑149 (MQ=255)                                            ctTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATg                                                                                                         >  8:188407/1‑149 (MQ=255)                                             ttCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAg                                                                                                                                           <  6:126728/114‑1 (MQ=255)                                                aCGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCAGGATGGCCt                                                                                                     >  8:234172/1‑149 (MQ=255)                                                  ggATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCAGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTc                                                                                                    >  4:104072/1‑148 (MQ=255)                                                     tCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATc                                                                                                >  7:262313/1‑149 (MQ=255)                                                         cGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGc                                                                                             <  2:61759/148‑1 (MQ=255)                                                               gATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGGTCTGCAGGGCGt                                                                                      >  7:97132/1‑149 (MQ=255)                                                                        ggacccGATGACGATGTCGGCCACGGTGTGGTTGCCGTCGGCGAAGTCAAGGCTCACTTGGTCAACCTGGTCGACGATCTTTTCCATGCGCTTGACGAAGTGCACTGTGCCCGGCTGGATGGCCTCGATCTGCACGCCCTGCAGATCga                                                                             <  6:219769/146‑2 (MQ=255)                                                                           cccGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCAc                                                                          >  1:146238/1‑149 (MQ=255)                                                                              gATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGt                                                                       <  7:234172/149‑1 (MQ=255)                                                                                      tGTCGGCCACGGTGTGGGTGCCGGCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTg                                                               <  2:113051/149‑1 (MQ=255)                                                                                           gCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATg                                                            >  7:90996/1‑147 (MQ=255)                                                                                           gCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTa                                                          <  4:241778/149‑1 (MQ=255)                                                                                            ccACTGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCAGTTTGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCTTGCAGGTCGCCACGGTGGATGGTGATGTAg                                                         <  2:156407/149‑1 (MQ=255)                                                                                             cACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAgg                                                        >  6:141372/1‑149 (MQ=255)                                                                                               cGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCa                                                      <  6:320146/149‑1 (MQ=255)                                                                                                   gaaaagatcgtcgacgaaggtgaccaagtgcgcctggacttcgccgacgATCTTTTCCAGGCGCTTGCAGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAgcgc                                                  >  6:258850‑M2/50‑149 (MQ=255)                                                                                                     gggTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTACCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCg                                                <  1:267008/149‑1 (MQ=255)                                                                                                      ggTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCg                                                >  4:1112/1‑148 (MQ=255)                                                                                                          tcgtcgacgaaggtgaccaagtgcgcctggacttcgccgacgATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGa                                                                    >  7:24752‑M2/43‑124 (MQ=255)                                                                                                          tcgtcgacgaaggtgaccaagtgcgcctggacttcgccgacgATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGa                                                                    <  8:24752‑M2/82‑1 (MQ=255)                                                                                                                gCGAAGTCCAGGCGCACGTGGTCACCTTCGTCGACGATCTTTTCCATGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCgcggcg                                     <  7:242138/149‑1 (MQ=255)                                                                                                                 cGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGcggcgg                                    <  8:262313/149‑1 (MQ=255)                                                                                                                 cGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGcggcgg                                    <  3:104072/149‑1 (MQ=255)                                                                                                                   aaGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCggg                                   >  5:208967/1‑148 (MQ=255)                                                                                                                   aaGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGc                                  <  2:146238/149‑1 (MQ=255)                                                                                                                      tCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCaaa                               <  3:1112/149‑1 (MQ=255)                                                                                                                        cAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAg                                                                                           >  1:82780/1‑87 (MQ=255)                                                                                                                        cAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAg                                                                                           <  2:82780/87‑1 (MQ=255)                                                                                                                                         cTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATgcgc            <  7:190003/149‑1 (MQ=255)                                                                                                                                         cTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATgcgc            >  6:222655/1‑149 (MQ=255)                                                                                                                                         cTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATgcgc            >  8:62533/1‑149 (MQ=255)                                                                                                                                             gtcgACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGa          >  6:247147/1‑147 (MQ=255)                                                                                                                                             gtcgACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACa        <  5:141372/149‑1 (MQ=255)                                                                                                                                                gacgATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAgg      <  8:90996‑M2/144‑1 (MQ=255)                                                                                                                                                 acgATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGcggcgg                                    <  6:125982‑M2/114‑1 (MQ=255)                                                                                                                                                 acgATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGcggcgg                                    >  5:125982‑M2/4‑117 (MQ=255)                                                                                                                                                 acgATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTa    <  3:179355‑M2/146‑1 (MQ=255)                                                                                                                                                   gATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAAt  >  8:299250‑M2/2‑149 (MQ=255)                                                                                                                                                   gATCTATTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCAACGGTGGATGGTGATGTAGGCAGCGCAGTATTCGCGGCGGGCAACCTCGCCCAGCGGAATGCGAGACAGGTAAt  >  6:83126‑M2/2‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCGACCCAGCCGCTGTAGATCGGCGCTTCAGCCCCCAGCAACTCTTCACGGATCTTCGAGTGGATGCCGTCGGCCCCGATGACGATGTCGGCCACGGTGTGGGTGCCGTCGGCGAAGTCCAGGCGCACTTGGTCACCTTCGTCGACGATCTTTTCCAGGCGCTTGCCGAAGTGCACGGTGCCCGGCTGGATGGCCTCGATCTGCAGGGCGTGCAGGTCGCCACGGTGGATGGTGATGTAGGCAGCGCCGTATTCGCGGCGGGCAAACTCGCCCAGCGGAATGCGCGACAGGTAAT  >  NC_002947/4447020‑4447314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.