| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5874873 | 55 (1.060) | 7 (0.140) | 4/258 | NT | 12.7% | coding (1298/1515 nt) | ilvA‑II | threonine deaminase |
| ? | NC_002947 | = 5874924 | 43 (0.850) | coding (1247/1515 nt) | ilvA‑II | threonine deaminase | |||||
CACGCGCCCGTCAGCCGCGCCATGGTTGCGGTAGTGGAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCGGGTGGGTCTGCACCCCAACGAAGATAT > NC_002947/5874776‑5875068 | cacGCGCCCGTCAGCCGCGCCATGGTTGCGGTAGTGGAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGt > 7:25276/1‑149 (MQ=255) gcgcCCGTCAGCCGCGCCATGGTTGCGGTAGTGGAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTggc < 5:148728‑M2/149‑4 (MQ=255) gcCCGTCAGCCGCGCCATGGTTGCGGTAGTGGAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGgccg > 3:172991/1‑149 (MQ=255) gTCAGCCGCGCCATGGTTGCGGTAGTGGAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGa < 8:25276/149‑1 (MQ=255) tCAGCCGCGCCATGGTTGCGGTAGTGGAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGAc > 2:173790/1‑149 (MQ=255) gcCATGGTTGCGGTAGTGGAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGAc < 7:156003/149‑1 (MQ=255) cATGGTTGCGGTAGTGGAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTgg > 2:77413‑M2/1‑129 (MQ=255) cATGGTTGCGGTAGTGGAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTgg < 1:77413‑M2/131‑3 (MQ=255) tGGTTGCGGTAGTGGAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAat < 2:248705/149‑1 (MQ=255) tAGTGGAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCtt < 4:172991/149‑1 (MQ=255) ggAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGgccgcc < 5:144995/121‑1 (MQ=255) ggAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGgccgcc > 6:144995/1‑121 (MQ=255) gAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGcc > 7:101537/1‑148 (MQ=255) tCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCg < 5:234380/149‑1 (MQ=255) tCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCg > 8:72893/1‑149 (MQ=255) gagaTGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGtt < 8:27402/149‑1 (MQ=255) ccAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGt > 7:247049/1‑147 (MQ=255) ccAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGt > 2:195213/1‑147 (MQ=255) ccAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTc < 7:247325/148‑1 (MQ=255) gcgcCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGAt < 6:148728/149‑1 (MQ=255) gcccgcccAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCg < 7:72893/149‑1 (MQ=255) ccAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAAcc > 5:80537/1‑149 (MQ=255) ccAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAAcc > 5:75818/1‑149 (MQ=255) ccAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCACCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTaa > 7:33749/1‑147 (MQ=255) ttgttgAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCggg > 7:154944/1‑147 (MQ=255) aGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTg > 1:100841/1‑149 (MQ=255) ggAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGt > 2:111812/1‑149 (MQ=255) gAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGtt < 1:111812/149‑1 (MQ=255) gAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGtt > 1:165473/1‑149 (MQ=255) cgTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGATTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCg < 4:191077/148‑1 (MQ=255) gAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCAGCCGACCATATGACGAATATGCAGGTTGGCCAATTCCTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGt > 2:238191/1‑147 (MQ=255) aCAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGt < 1:110060/149‑1 (MQ=255) aGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCAGACCATATGACGAATATGAAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGtt > 8:197661/1‑148 (MQ=255) gTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGTCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTtgc < 7:139502/149‑1 (MQ=255) tGGCCGCTCTGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTggccaggggcactgttcaacttcctcaacaagctgggcgggcgctggaacatctcgatgttccactaccgcaaccatggcgcggctgacgggc < 2:79712‑M2/149‑94 (MQ=255) tGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTggccaggggcactgttcaacttcctcaacaagctgggcgggcgctggaacatctcgatgttccactaccgcaaccatggcgcggctgacgggc < 1:1773‑M2/149‑94 (MQ=255) tGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTggccaggggcactgttcaacttcctcaacaagctgggcgggcgctggaacatctcgatgttccactaccgcaaccatggcgcggctgacgggc < 1:7107‑M2/149‑94 (MQ=255) gCCGCGCGGGGAATTCGAAGCGCAGCACAATTTCGTCGCTGGCACCGGCCGAGTggccaggggcactgttcaacttactcaacaagctgggcgggcgctggaacatctcgatgttccactacctcaaccatggcgaggctgacgggcgc < 7:292449‑M2/149‑96 (MQ=255) ggggAATTCGAAGCGCAGCACCATTTCGTCGCTGGCAGCGGCCGAGTGTCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGcgccgc < 8:247049/147‑1 (MQ=255) ggggAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTggccaggggcactgttcaacttcctcaacaagctgggcgggcgctggaacatctcgatgttccactaccgcaaccatggcgcggctgacgggcgcgtggtg > 2:7107‑M2/1‑47 (MQ=255) ggggAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTggccaggggcactgttcaacttcctcaacaagctgggcgggcgctggaacatctcgatgttccactaccgcaaccatggcgcggctgacgggcgcgtggtg > 2:1773‑M2/1‑47 (MQ=255) gAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAat > 7:43741/1‑66 (MQ=255) gAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAat < 8:43741/66‑1 (MQ=255) gAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCcgcgcgcg > 1:114715/1‑149 (MQ=255) gAATTAGAAGCGCAGCACCATTTAGTCGCTGGCACCGGACGAGTGTCCTCCGACCATATTACGAATATGCAGCTTGGCCAATTCGTTGTAGGTAAGATCGGTAACCTGGAAGACCTTTTCGGTCAGTTGCTGCACCATCGCagcgcgag > 8:91295/1‑147 (MQ=255) aTTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTggccaggggcactgttcaacttcctcaacaagctgggcgggcgctggaacatctcgatgttccactaccgcaaccatggcgcggctgacgggcgcgtggtggcgggg > 1:79712‑M2/1‑42 (MQ=255) gcgcAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGtttt < 2:100841/149‑1 (MQ=255) cagcaCCATTTCGTCGCTGGCACGGGCCGAGTTGCCGCCGACTATATGACGAATATGCAGCTTGGCCATTTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCg < 5:121466/149‑1 (MQ=255) cagcaCCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCg < 8:101537/149‑1 (MQ=255) ccATTTCGTCGCTGGCACCGGCCGAGTGGCCACCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCGCCAGCGCCGCGCGCGGGTCGTTTTCCgggtgg < 8:33749/149‑1 (MQ=255) ccATTTCGTCGCTGGCACCGGCCGAGTGCCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCgggtgg > 1:184045/1‑149 (MQ=255) cATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCgggtggg > 3:70118/1‑149 (MQ=255) aTTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCgggtggg > 3:253323/1‑148 (MQ=255) gtcgCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCGGGTGGGTCTGc < 6:136645/148‑1 (MQ=255) tcgCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCGGGTGGGTCt < 2:311883/145‑1 (MQ=255) tcgCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCGGGTGGGTCt > 1:311883/1‑145 (MQ=255) cACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCGGGTGGGTCTGCACCCCAACg < 2:114715/149‑1 (MQ=255) ccGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCGGGTGGGTCTGCACCCCAACGaa < 2:165473/149‑1 (MQ=255) cGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCGGGTGGGTCTGCACCCCAACGAAGatat < 8:154944/149‑1 (MQ=255) | CACGCGCCCGTCAGCCGCGCCATGGTTGCGGTAGTGGAACATCGAGATGTTCCAGCGCCCGCCCAGCTTGTTGAGGAAGTTGAACAGTGCCCCTGGCCGCTCGGGGAATTCGAAGCGCAGCACCATTTCGTCGCTGGCACCGGCCGAGTGGCCGCCGACCATATGACGAATATGCAGCTTGGCCAATTCGTTGTCGGTCAGATCGGTAACCGGGAAGCCCTGTTCGGTCAGTTGCTGCACCAGCGCCGCGCGCGGGTCGTTTTCCGGGTGGGTCTGCACCCCAACGAAGATAT > NC_002947/5874776‑5875068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |