Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_002947	1,842,640	Δ36 bp	100%	coding (2119‑2154/2754 nt)	gacS ←	sensor protein GacS

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	1842640	1842675	36	76 [0]	[0] 75	gacS	sensor protein GacS

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1842639	0 (0.000)	61 (1.230)	54/254	NT	100%	coding (2155/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	1842676 =	0 (0.000)					coding (2118/2754 nt)	gacS	sensor protein GacS

TCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGT  >  NC_002947/1842491‑1842784                                                                                                                                                     |                                                                                                                                                  tcCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCAC                                                                                                                                                   >  6:154737‑M1/1‑149 (MQ=255)   cATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACg                                                                                                                                                  <  7:225237‑M1/148‑2 (MQ=255)   cATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGACATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACgg                                                                                                                                                 >  4:110427‑M1/1‑147 (MQ=255)      gCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcct                                                                                                                                              >  6:138620‑M1/1‑144 (MQ=255)       ccGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctg                                                                                                                                             <  3:266607‑M1/149‑7 (MQ=255)       ccGCTGGGCAACAACGCGCGTTTTTCGTTGGCCATGGCATTGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcct                                                                                                                                              <  4:249770‑M1/148‑6 (MQ=255)          cTGTGCAACAACGCGCGTTTTTCGTTTGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtac                                                                                                                                          <  2:77084‑M1/149‑10 (MQ=255)                      gcgcgTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataac                                                                                                                               >  5:259761‑M1/1‑128 (MQ=255)                       cgcgTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataacca                                                                                                                             <  7:50526‑M1/149‑23 (MQ=255)                        gcgTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccat                                                                                                                            <  2:68157‑M1/149‑24 (MQ=255)                          gTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattg                                                                                                                          >  3:227067‑M1/1‑124 (MQ=255)                            ttttCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgtt                                                                                                                        >  7:277195‑M1/1‑122 (MQ=255)                                 gTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGTTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacg                                                                                                                    <  3:190931‑M1/148‑32 (MQ=255)                                  ttGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcttacccattgtggacggc                                                                                                                  >  4:186489‑M1/1‑116 (MQ=255)                                     gCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggcca                                                                                                                <  4:227067‑M1/148‑36 (MQ=255)                                            catggGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcg                                                                                                        <  5:154737‑M1/149‑44 (MQ=255)                                                ggCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggca                                                                                                     <  2:217249‑M1/148‑47 (MQ=255)                                                  cAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacc                                                                                                   >  5:325658‑M1/1‑100 (MQ=255)                                                  cAGTGAGGGCGACGATCGGCAGCGGGTTGACGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCTCggcctgtaccgccgcataaccattgttgacggccagtacctcggcaccc                                                                                                  <  2:228529‑M1/149‑50 (MQ=255)                                                      gAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGTCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggt                                                                                              >  1:163641‑M1/1‑96 (MQ=255)                                                            gacgaTCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcga                                                                                        <  6:221515‑M1/149‑60 (MQ=255)                                                             acgaTCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGTCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgag                                                                                       <  2:163641‑M1/149‑61 (MQ=255)                                                               gaTCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGGACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgag                                                                                       >  1:85206‑M1/1‑87 (MQ=255)                                                                aTCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcag                                                                                    <  3:110427‑M1/149‑64 (MQ=255)                                                                 tCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagg                                                                                   >  5:321920‑M1/1‑85 (MQ=255)                                                                 tCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagg                                                                                   >  4:271799‑M1/1‑85 (MQ=255)                                                                 tCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagg                                                                                   <  2:85206‑M1/149‑65 (MQ=255)                                                                   ggCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggt                                                                                 <  2:51654‑M1/149‑67 (MQ=255)                                                                    gCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgggcagggtt                                                                                >  7:224557‑M1/1‑82 (MQ=255)                                                                     gagCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGTGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggttt                                                                               <  6:145284‑M1/148‑69 (MQ=255)                                                                       gCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggttttt                                                                             <  4:147355‑M1/149‑71 (MQ=255)                                                                           gTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtccctcggcacccaggtcttcgagcagggtttttac                                                                           >  7:179599‑M1/1‑75 (MQ=255)                                                                               ccGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcag                                                                     >  4:86761‑M1/1‑71 (MQ=255)                                                                               ccGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagca                                                                      <  6:167489‑M1/148‑78 (MQ=255)                                                                                         tgtTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcg                                                           >  6:100609‑M1/1‑61 (MQ=255)                                                                                           ttCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcgg                                                          <  5:100609‑M1/148‑90 (MQ=255)                                                                                            tctcCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggca                                                        >  7:282759‑M1/1‑58 (MQ=255)                                                                                             ctcCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcat                                                       >  5:66391‑M1/1‑57 (MQ=255)                                                                                             ctcCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcat                                                       >  8:78863‑M1/1‑57 (MQ=255)                                                                                             ctcCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccatagttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcat                                                       >  5:15048‑M1/1‑57 (MQ=255)                                                                                                ccACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattg                                                     <  5:138620‑M1/148‑95 (MQ=255)                                                                                                ccACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccatt                                                                                                                           <  1:161497‑M1/78‑25 (MQ=255)                                                                                                ccACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccatt                                                                                                                           >  2:161497‑M1/1‑54 (MQ=255)                                                                                                  acaGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcg                                                  >  6:264634‑M1/1‑52 (MQ=255)                                                                                                   caGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgt                                                 <  6:321920‑M1/149‑99 (MQ=255)                                                                                                               ttCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagccgcaggttggcggcattgtcgtcgacgcagagta                                     >  7:117177‑M1/1‑39 (MQ=255)                                                                                                                 cGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttacca                                                                         >  2:174731‑M1/1‑37 (MQ=255)                                                                                                                 cGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttacca                                                                         <  1:174731‑M1/111‑75 (MQ=255)                                                                                                                  ggTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtggacgcagagtattt                                  >  3:42492‑M1/1‑36 (MQ=255)                                                                                                                    tACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttc                                <  3:86761‑M1/149‑116 (MQ=255)                                                                                                                    tACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggccagtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcgtcgagcagggtgtttagcagcagcagggtggcggcagtgtcgtcgacgcagagtattttc                                >  3:175047‑M1/1‑34 (MQ=255)                                                                                                                      cAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcgg                              <  5:267802‑M1/149‑118 (MQ=255)                                                                                                                       aGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggt                             >  8:190327‑M1/1‑31 (MQ=255)                                                                                                                       aGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggt                             >  8:195305‑M1/1‑31 (MQ=255)                                                                                                                         gcgcGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcg                           >  7:84547‑M1/1‑29 (MQ=255)                                                                                                                         gcgcGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcg                           >  4:163461‑M1/1‑29 (MQ=255)                                                                                                                             ggCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgc                       <  6:138145‑M1/149‑125 (MQ=255)                                                                                                                                cGTCCATGCCGGGCATCCGCACggcctgtaccgccgcataccccttgttgacggccagtacctcggcacccaggtcttcgagcaggggttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgcggg                    <  8:277195‑M1/149‑128 (MQ=255)                                                                                                                                   ccATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgcttgccg                 >  4:279916‑M1/1‑19 (MQ=255)                                                                                                                                     aTGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcgg                                                          >  6:326898‑M1/1‑17 (MQ=255)                                                                                                                                     aTGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcgg                                                          <  5:326898‑M1/106‑90 (MQ=255)                                                                                                                                      tGCCGGGCATCTGCACggcctgtagcgcctcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccaggagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttg              <  3:283779‑M1/149‑134 (MQ=255)                                                                                                                                       gCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctg                     >  7:131605‑M1/1‑15 (MQ=255)                                                                                                                                       gCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctg                     <  8:131605‑M1/141‑127 (MQ=255)                                                                                                                                        ccGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttgg             <  3:186489‑M1/148‑135 (MQ=255)                                                                                                                                        ccGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttgg             <  3:279916‑M1/148‑135 (MQ=255)                                                                                                                                           ggCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggtt         >  6:145666‑M1/1‑11 (MQ=255)                                                                                                                                             cATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgc       <  7:190327‑M1/149‑141 (MQ=255)                                                                                                                                             cATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgc       <  7:195305‑M1/149‑141 (MQ=255)                                                                                                                                              aTCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgc       >  2:303252‑M1/1‑8 (MQ=255)                                                                                                                                                 tGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgctccc   >  7:66333‑M1/1‑5 (MQ=255)                                                                                                                                                  gCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgctcccc  >  2:24597‑M1/1‑4 (MQ=255)                                                                                                                                                  gCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgctcccc  >  4:237397‑M1/1‑4 (MQ=255)                                                                                                                                                  gCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttc                                <  6:81792‑M1/119‑116 (MQ=255)                                                                                                                                                  gCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttc                                >  5:81792‑M1/1‑4 (MQ=255)                                                                                                                                                   cACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgctc     <  5:264634‑M1/145‑143 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGT  >  NC_002947/1842491‑1842784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑