| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 354589 | 49 (1.000) | 3 (0.060) | 3/254 | NT | 6.2% | coding (583/846 nt) | cbcW | choline/betaine/carnitine ABC transporter permease |
| ? | NC_002947 | = 354615 | 43 (0.910) | coding (557/846 nt) | cbcW | choline/betaine/carnitine ABC transporter permease | |||||
CAGTGCGTTGACCACAGGTTTGCCCAGGCCATCAGCGCCAACCAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/354440‑354589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgCCGGCAAGGCCTTTGGCTGCTCGCGTCGTCAGCTGCTTACCCGTATCGAACTGCCGCACGCGATGCCAAGCATCGCCGCCGGTGTCACTCAATGCATCATGCTGTCGCTGTCGATGGTGGTCATTGCCGCCCTGGTTGGCGCTGATG < NC_002947/354615‑354469 CAGTGCGTTGACCACAGGTTTGCCCAGGCCATCAGCGCCAACCAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGA < 3:227271/148‑1CAGTGCGTTGACCACAGGTTTGCCCAGGCCATCAGCGCCAACCAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGA < 8:17667/148‑1 GCCAACCAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGCCGGCAAGGCCTTTGGCTGCTCGCGTCGTCAGC < 5:195317/147‑1 GCCAACCAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGCCGGCAAGGCCTTTGGCTGCTCGCGTCGTCAGC > 6:195317/1‑147 AACCAGCTCGGCAATGACCACCAACGACAGCGACAGCAAGATGCATTGACTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCACCTGACGCCGGCAAGGCCTTTGGCTGCTCGCGTCGTCAGCTGCTT < 5:309798/149‑1 GACGCCGGCAAGGCCTTTGGCTGCTCGCGTCGTCAGCTGCTTACCCGTATCGAACTGCCGCACGCGATGCCAAGCATCGCCGCCGGTGTCACTCAATGCATCATGCTGTCGCTGTCGATGGTGGTCATTGCCGCCCTGGTTGGCGCTGA > 7:126634/1‑149 CGCCGGCAAGGCCTTTGGCTGCTCGCGTCGTCAGCTGCTTACCCGTATCGAACTGCCGCACGCGATGCCAAGCATCGCCGCCGGTGTCACTCAATGCATCATGCTGTCGCTGTCGATGGTGGTCATTGCCGCCCTGGTTGGCGCTGATG < 3:295914/149‑1 GCCGGCAAGGCCTTTGGCTGCTCGCGTCGTCAGCTGCTTACCCGTATCGAACTGCCGCACGCGATGCCAAGCATCGCCGCCGGTGTCACTCAATGCATCATGCTGTCGCTGTCGATGGTGGTCATTGCCGCCCTG < 1:154993/135‑1 GCCGGCAAGGCCTTTGGCTGCTCGCGTCGTCAGCTGCTTACCCGTATCGAACTGCCGCACGCGATGCCAAGCATCGCCGCCGGTGTCACTCAATGCATCATGCTGTCGCTGTCGATGGTGGTCATTGCCGCCCTG > 2:154993/1‑135 CAGTGCGTTGACCACAGGTTTGCCCAGGCCATCAGCGCCAACCAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/354440‑354589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgCCGGCAAGGCCTTTGGCTGCTCGCGTCGTCAGCTGCTTACCCGTATCGAACTGCCGCACGCGATGCCAAGCATCGCCGCCGGTGTCACTCAATGCATCATGCTGTCGCTGTCGATGGTGGTCATTGCCGCCCTGGTTGGCGCTGATG < NC_002947/354615‑354469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |