New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 354589	49 (1.000)	3 (0.060)	3/254	NT	6.2%	coding (583/846 nt)	cbcW	choline/betaine/carnitine ABC transporter permease
	?	NC_002947	= 354615	43 (0.910)					coding (557/846 nt)	cbcW	choline/betaine/carnitine ABC transporter permease

CATCAGCGCCAACCAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGCCCAGGCCGAACAGGGTCAGGGTAGGGATCAGGTAGACGAAGGTG  >  NC_002947/354469‑354761                                                                                                                                                   |                                                                                                                                                   cATCAGCGCCAACCAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGcg                                                                                                                                                  <  3:295914‑M2/149‑3 (MQ=255)   tCAGCGCCAACCAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGcgtc                                                                                                                                                >  7:126634‑M2/1‑145 (MQ=255)        gacAACCAGGTCGTCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATc                                                                                                                                            <  8:175930/146‑1 (MQ=255)          cAACCAGGGCGGCAATGACCACCAGCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAAc                                                                                                                                         <  4:254022/149‑1 (MQ=255)           aaCCAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCGATCAAct                                                                                                                                        >  5:143097/1‑149 (MQ=255)              cAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGc                                                                                                                                                   <  1:154993‑M2/135‑2 (MQ=255)              cAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGc                                                                                                                                                   >  2:154993‑M2/1‑134 (MQ=255)                    ggcAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCa                                                                                                                               <  2:54101/149‑1 (MQ=255)                     gcAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGc                                                                                                                                   <  5:276108/144‑1 (MQ=255)                     gcAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGc                                                                                                                                   >  6:276108/1‑144 (MQ=255)                          gACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATc                                                                                                                                            <  7:248127/130‑1 (MQ=255)                          gACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATc                                                                                                                                            >  8:248127/1‑130 (MQ=255)                              accaTCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGAt                                                                                                                     <  5:209742/149‑1 (MQ=255)                                                    tgCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAAt                                                                                                <  8:178280/148‑1 (MQ=255)                                                     gCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATgg                                                                                              >  5:162181/1‑149 (MQ=255)                                                       aTTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGgc                                                                                            >  2:75793/1‑149 (MQ=255)                                                           aGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCgcag                                                                                        <  2:45872/149‑1 (MQ=255)                                                                   cggcggCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCg                                                                                <  6:162181/149‑1 (MQ=255)                                                                    gcacgcgATGCCAAGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCg                                                                                >  3:46320/5‑148 (MQ=255)                                                                     gcggcgATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGaa                                                                              <  2:159821/149‑1 (MQ=255)                                                                     cacgcgATGCCAAGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGaa                                                                              >  7:28332/4‑149 (MQ=255)                                                                      acgcgATGCCAAGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGaa                                                                              >  3:93214/3‑148 (MQ=255)                                                                              cTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACgg                                                                      <  1:75793/148‑1 (MQ=255)                                                                               ttGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTg                                                                    >  7:18884/1‑149 (MQ=255)                                                                                  gCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGTTGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTg                                                                    >  1:250836/1‑146 (MQ=255)                                                                                     tCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATc                                                              <  4:295914/149‑1 (MQ=255)                                                                                        cgTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGc                                                           >  8:29411/1‑149 (MQ=255)                                                                                          tGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGccc                                                         >  5:17655/1‑149 (MQ=255)                                                                                             ggCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCgg                                                      >  8:36631/1‑149 (MQ=255)                                                                                               cAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGca                                                    <  7:36631/149‑1 (MQ=255)                                                                                                  ttCGATACGGGTAAGCAGCTGACTACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAacac                                                                           <  8:171775/123‑1 (MQ=255)                                                                                                  ttCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATc                                                              <  6:91748/136‑1 (MQ=255)                                                                                                  ttCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATAAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATc                                                              >  5:91748/1‑136 (MQ=255)                                                                                                     gATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGc                                              >  8:111947/1‑149 (MQ=255)                                                                                                     gATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGc                                              >  4:252383/1‑149 (MQ=255)                                                                                                      aTACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTg                                                                    >  4:77814/1‑126 (MQ=255)                                                                                                      aTACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTg                                                                    <  3:77814/126‑1 (MQ=255)                                                                                                          gggTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGCCCAgg                                         >  5:203841/1‑149 (MQ=255)                                                                                                              aaGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGcgtcaggtgcttacccgtatcgaactgccgcacgcgatgccaagcatcgccgccggtgtcagtcaatgcatcttgctgtcgctgtcgttggtggtcattgccgagctggtt                                     <  5:309798‑M2/149‑112 (MQ=255)                                                                                                                   gcTGACGACGCGAGCAGCCAAAGGCCTTGCCGGcgtcagctgcttacccgtatcgaactgccgcacgcgatgccaagcatcgccgccggtgtcactcaatgcatcatgctgtcgctgtcgatggtggtcattgccgccctggttggc                                  <  5:195317‑M2/147‑115 (MQ=255)                                                                                                                   gcTGACGACGCGAGCAGCCAAAGGCCTTGCCGGcgtcagctgcttacccgtatcgaactgccgcacgcgatgccaagcatcgccgccggtgtcactcaatgcatcatgctgtcgctgtcgatggtggtcattgccgccctggttggc                                  >  6:195317‑M2/1‑33 (MQ=255)                                                                                                                   gcTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGCCCAGGCCGAAcagg                                <  8:28332/149‑1 (MQ=255)                                                                                                                    cTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGCCCAGGCCGAAcaggg                               >  3:11502/1‑149 (MQ=255)                                                                                                                       acgacgCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGaa                                                                              <  4:142151/99‑1 (MQ=255)                                                                                                                       acgacgCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGaa                                                                              >  3:142151/1‑99 (MQ=255)                                                                                                                              gAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGCCCAGGCCGAACAGGGTCAGGGTAgg                     <  7:111947/149‑1 (MQ=255)                                                                                                                               agcagcCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGCCCAGGCCGAACAGGGTCAGGGTAggg                    <  7:29411/149‑1 (MQ=255)                                                                                                                                gcagcCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGCCCAGGCCGAACAGGGTCAGGGTAGGGa                   >  3:134008/1‑149 (MQ=255)                                                                                                                                   cccAAAGCCCTACCCGGCGTCCATCAACTCTTGCGGAACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATTGCGAACACAACGGTGGAGATCAGCCCCGGCACAAAGCCCAGTCAGAACAGGGTCAGGGTAGGGAt                  >  6:208794/2‑147 (MQ=255)                                                                                                                                            cTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTg                                                                    >  5:277084/1‑88 (MQ=255)                                                                                                                                            cTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTg                                                                    <  6:277084/88‑1 (MQ=255)                                                                                                                                            cTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGCCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGCCCAGGCCGAACAGGGTCAGGGTAGGGATCAGGTa            <  1:272163/144‑1 (MQ=255)                                                                                                                                            cTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGACAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGCCCAGGCCGAACAGGGTCAGGGTAGGGATCAGGTa            >  2:272163/1‑144 (MQ=255)                                                                                                                                                 cGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGCCCAGGCCGAACAGGGTCAGGGTAGGGATCAGGTAGACGAAGGTg  <  6:17655/149‑1 (MQ=255)                                                                                                                                                 cGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGCCCAGGCCGAACAGGGTCAGGGTAGGGATCAGGTAGACGAAGGTg  >  5:226666/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CATCAGCGCCAACCAGGGCGGCAATGACCACCATCGACAGCGACAGCATGATGCATTGAGTGACACCGGCGGCGATGCTTGGCATCGCGTGCGGCAGTTCGATACGGGTAAGCAGCTGACGACGCGAGCAGCCAAAGGCCTTGCCGGCGTCCATCAACTCTTGCGGCACGTCGCAGATGCCCAGGTAGGTCAGGCGAATGGGCGCAGCAATGGCGAACACCACGGTGGAGATCAGCCCCGGCACCACGCCCAGGCCGAACAGGGTCAGGGTAGGGATCAGGTAGACGAAGGTG  >  NC_002947/354469‑354761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.