New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 497023 | 54 (1.100) | 4 (0.090) | 4/246 | NT | 6.5% | coding (895/2388 nt) | PP_0409 | two‑component system sensor histidine kinase |
? | NC_002947 | = 497096 | 64 (1.390) | coding (968/2388 nt) | PP_0409 | two‑component system sensor histidine kinase |
GCCGTGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/496870‑497023 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacgccTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCAGAAG < NC_002947/497096‑496950 GCCGTGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGC > 2:194046/1‑148 CAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCCTCTTCG > 7:203743/1‑149 AACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAAC < 5:19572/126‑1 AACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAAC > 6:19572/1‑126 GCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCCTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACG < 8:203743/149‑1 TGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCCTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTG > 5:114875/1‑140 TGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCCTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTG < 6:114875/140‑1 GCAACGCCTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCAAACAACAAGGCCATGTTCTGC < 4:87932/149‑1 ACGCCTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACGGACCGAACAACA > 2:264227/1‑132 CCTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCACGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCAGAAG > 8:69197/1‑149 GCCGTGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/496870‑497023 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacgccTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCAGAAG < NC_002947/497096‑496950 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |