New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	594783 =	58 (1.190)	5 (0.120)	4/232	NT	9.9%	intergenic (‑22/+105)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
	?	NC_002947	594844 =	40 (0.920)					intergenic (‑83/+44)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease

GCGTGGCGGGCTTACCGGCAATCGCTGGCTGACGGCCTGTCCATACACCTCTGAGTGCGCGTAATGATCAAACACCTCACCGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/594941‑594783 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcGTGCCCG‑CGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAGCCCGCCACGCCGGCACGCTGCCCATCAGCAACGCGGCCCCCAGGATGA  >  NC_002947/594844‑594979                                                                                                                                                                                                                                                                                                          GCGTGGCGGGCTTACCGGCAATCGCTGGCTGACGGCCTGTCCATACACCTCTGAGTGCGCGTAATGATCAAACACCTCACCGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGT                                                                                                                                                     <  7:204781/149‑1           CTTACCGGCAATCGCTGGCTGACGGCCTGTCCATACACCTCTGAGTGCGCGTAATGATCAAACACCTCACCGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGC                                                                                                                                           <  7:245025/149‑1                                                 CTCTGAGTGCGCGTAATGATCAAACACCTCACCGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCT                                                                                                                                                       <  5:27195/99‑1                                                 CTCTGAGTGCGCGTAATGATCAAACACCTCACCGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCT                                                                                                                                                       >  6:27195/1‑99                                                                                                      CGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGCGTGCCCG‑CGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAGCCC                                               >  2:220909/1‑149                                                                                                      CGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGCATGCCCGAGGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGGACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAGCC                                                >  1:245741/1‑149                                                                                                             ACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGCGTGCCCG‑CGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCG                                                       >  5:25697/1‑134                                                                                                             ACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGCGTGCCCG‑CGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCG                                                       <  6:25697/134‑1                                                                                                               AGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGCATGCCCG‑CGAAG‑AGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAGCCCGCCACGCCGG                                     >  5:77288/1‑149                                                                                                                                                 CCTGTGGGAGCGGGCGTGCCCG‑CGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAGCCCGCCACGCCGGCACGCTGCCCATCAGCAACGCGGCCCCCAGGA     <  8:204781/148‑1                                                                                                                                                     TGGGAGCGGGCGTGCCCG‑CGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAGCCCGCCACGCCGGCACGCTGCCCATCAGCAACGCGGCCCCCAGGATGA  >  1:292323/1‑147                                                                                                                                                     TGGGAGCGGGCGTGCCCG‑CGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAGCCCGCCACGCCGGCACGCTGCCCATCAGCAACGCGGCCCCCAGGATGA  >  4:233384/1‑147                                                                                                                                                        GAGCGGGCGTGCCCG‑CGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAGCCCGCCACGCCG                                      >  1:212492/1‑108                                                                                                                                                        GAGCGGGCGTGCCCG‑CGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAGCCCGCCACGCCG                                      <  2:212492/108‑1                                                                                                                                                        GAGCGGGCGTGCCCG‑CGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAGCCCGCCACGCCG                                      >  5:140516/1‑108                                                                                                                                                        GAGCGGGCGTGCCCG‑CGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAGCCCGCCACGCCG                                      <  6:140516/108‑1                                                                                                                                                                                                                                                                                                          GCGTGGCGGGCTTACCGGCAATCGCTGGCTGACGGCCTGTCCATACACCTCTGAGTGCGCGTAATGATCAAACACCTCACCGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/594941‑594783 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcGTGCCCG‑CGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGCGATTGCCGGTAAGCCCGCCACGCCGGCACGCTGCCCATCAGCAACGCGGCCCCCAGGATGA  >  NC_002947/594844‑594979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.