New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 634613	75 (1.530)	4 (0.090)	4/246	NT	5.2%	coding (919/2016 nt)	PP_0546	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 634660	76 (1.660)					coding (966/2016 nt)	PP_0546	sigma‑54 dependent transcriptional regulator

CTGGGTACGGTACGGGGTGGCGTGCTGGGCAAACCGTTGGAGTGCTTTTTCGCGTGCAGCCATGACGAAATGTTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/634460‑634613 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcgggCCGCGGCTGGGCGGCCGGCACCGACCACACCGGCGCCCGGGCCTGCCCCCGCAGGCTGGCGAACACCTGGCGACCGTCCAGGGTGCGCAGCGGCCAGACAGCACTGCCGCCGGGCGTGGCACGGCTGAACATTTCGTCATGGC  <  NC_002947/634660‑634518                                                                                                                                                                                                                                                                                                           CTGGGTACGGTACGGGGTGGCGTGCTGGGCAAACCGTTGGAGTGCTTTTTCGCGTGCAGCCATGACGAAATGTTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGC                                                                                                                                                        <  8:131781/147‑1  TGGGTACGGTACGGGGTGGCGTGCTGGGCAAACCGTTGGAGTGCTTTTTCGCGTGCAGCCATGACGAAATGTTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTG                                                                                                                                                     >  8:126282/1‑149    GGTACGGTACGGGGTGGCGTGCTGGGCAAACCGTTGGAGTGCTTTTTCGCGTGCAGCCATGACGAAATGTTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTGCG                                                                                                                                                   >  7:28721/1‑149      TACGGTACGGGGTGGCGTGCTGGGCAAACCGTTGGAGTGCTTTTTCGCGTGCAGCCATGACGAAATGTTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTGCGGG                                                                                                                                                 <  4:20396/149‑1                                     TTGGAGTGCTTTTTCGCGTGCAGCCATGACGAAATGTTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTGCG                                                                                                                                                   <  5:218877/116‑1                                     TTGGAGTGCTTTTTCGCGTGCAGCCATGACGAAATGTTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTGCG                                                                                                                                                   <  5:222903/116‑1                                     TTGGAGTGCTTTTTCGCGTGCAGCCATGACGAAATGTTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTGCG                                                                                                                                                   >  6:218877/1‑116                                     TTGGAGTGCTTTTTCGCGTGCAGCCATGACGAAATGTTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTGCG                                                                                                                                                   >  6:222903/1‑116                                                              ATGACGAAATGTTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTGCGGGCCGCGGCTGGGCGGCCGGCACCGACCACACCGGCGCCCGGGCCTGCCCCCGCAGGC                                                                                         >  7:121099/1‑149                                                              ATGACGAAATGTTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTGCGGGCCGCGGCTGGGCGGCCGGCACCGACCACACCGGCGCCCGGGCCTGCCCCCGCAGGC                                                                                         <  8:121099/149‑1                                                                         TTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTGCGGGCCGCGGCTGGGCGGCCGGCACCGACCACACCGGCGCCCGGGCCTGCCCCCGCAGG                                                                                          >  7:133753/1‑137                                                                         TTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTGCGGGCCGCGGCTGGGCGGCCGGCACCGACCACACCGGCGCCCGGGCCTGCCCCCGCAGG                                                                                          <  8:133753/137‑1                                                                                                                                                    CTGCGGGCCGCGGCTGGGCGGCCGGCACCGACCACACCGGCGCCCGGGCCTGCCCCCGCAGGCTGGCGAACACCTGGCGACCGTCCAGGGTGCGCAGCGGCCAGACAGCACTGCCGCCGGGCGTGGCACGGCTGAACATTTCGTCATGG   >  8:17543/1‑149                                                                                                                                                       CGGGCCGCGGCTGGGCGGCCGGCACCGACCACACCGGCGCCCGGGCCTGCCCCCGCAGGCTGGCGAACACCTGGCGACCGTCCAGGGTGCGCAGCGGCCAGACAGCACTGCCGCCGGGCGTGGCACGGCTGAACATTTCGTCATGGC  <  7:115220/147‑1                                                                                                                                                                                                                                                                                                           CTGGGTACGGTACGGGGTGGCGTGCTGGGCAAACCGTTGGAGTGCTTTTTCGCGTGCAGCCATGACGAAATGTTCAGCCGTGCCACGCCCGGCGGCAGTGCTGTCTGGCCGCTGCGCACCCTGGACGGTCGCCAGGTGTTCGCCAGCCTGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/634460‑634613 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcgggCCGCGGCTGGGCGGCCGGCACCGACCACACCGGCGCCCGGGCCTGCCCCCGCAGGCTGGCGAACACCTGGCGACCGTCCAGGGTGCGCAGCGGCCAGACAGCACTGCCGCCGGGCGTGGCACGGCTGAACATTTCGTCATGGC  <  NC_002947/634660‑634518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.