New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 833024	49 (1.000)	3 (0.060)	3/250	NT	6.0%	coding (787/1098 nt)	PP_0716	HlyD family secretion protein
	?	NC_002947	= 833048	48 (1.030)					coding (811/1098 nt)	PP_0716	HlyD family secretion protein

CAAACGGCCTGATCACCGACCTGCGCACAGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAG‑TGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/832872‑833024 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgcCCGGTAGCGCATCGAGCACCACCAGCACCGGGGTTTCAGGGCGCAAGCGACCGAGGTTGTTCTCGGTCATGTCGGCACTTATCCACACGTCATGGATACTGATCAGGGTCATCATCGGGCTACCTGCCCCGACATAGTGGCCAAC  <  NC_002947/833048‑832904                                                                                                                                                                                                                                                                                                             CAAACGGCCTGATCACCGACCTGCGCACAGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGATGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCC                                                                                                                                                        <  1:72244/149‑1  AAACGGCCTGATCACCGACCTGCGCACAGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAG‑TGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGG                                                                                                                                                      <  8:30386/149‑1                                     GCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAG‑TGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCCCGGTAGCGCATCGAGCACCACCAGCACCGG                                                                                                                    <  4:234218/148‑1                                          TATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAG‑TGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCCCGGTAGCGCATCGAGCACCACCAGCACCGGG                                                                                                                   <  5:31844/144‑1                                          TATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAG‑TGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCCCGGTAGCGCATCGAGCACCACCAGCACCGGG                                                                                                                   >  6:31844/1‑144                                                                                                                                                       GTGCCCGGTAGCGCATCGAGCACCACCAGCACCGGGGTTTCAGGGCGCAAGCGACCGAGGTTGTTCTCGGTCATGTCGGCACTTATCCACACGTCATGGATACTGATCAGGGTCATCATCGGGCTACCTGCCCCGACATAGTGGCCAAC  >  3:75208/1‑149                                                                                                                                                                                                                                                                                                             CAAACGGCCTGATCACCGACCTGCGCACAGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAG‑TGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/832872‑833024 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgcCCGGTAGCGCATCGAGCACCACCAGCACCGGGGTTTCAGGGCGCAAGCGACCGAGGTTGTTCTCGGTCATGTCGGCACTTATCCACACGTCATGGATACTGATCAGGGTCATCATCGGGCTACCTGCCCCGACATAGTGGCCAAC  <  NC_002947/833048‑832904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.