New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 83302449 (1.000)3 (0.060) 3/250 NT 6.0% coding (787/1098 nt) PP_0716 HlyD family secretion protein
?NC_002947 = 833048 48 (1.030)coding (811/1098 nt) PP_0716 HlyD family secretion protein

CTGATCACCGACCTGCGCACAGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCAGCG  >  NC_002947/832880‑833169
                                                                                                                                                |                                                                                                                                                 
cTGATCACCGACCTGCGCACAGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCtgg                                                                                                                                                <  8:290622/148‑1 (MQ=255)
cTGATCACCGACCTGCGCACAGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCtgg                                                                                                                                                >  7:290622/1‑148 (MQ=255)
      aCCGACCTGCGCACAGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCt                                                                                                                                         >  2:52007/1‑149 (MQ=255)
        cGACCTGCGCACAGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCg                                                                                                                                       <  8:167989/149‑1 (MQ=255)
              gcgcACAGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATgcgc                                                                                                                                 >  1:63663/1‑149 (MQ=255)
              gcgcACAGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATgcgc                                                                                                                                 >  6:73001/1‑149 (MQ=255)
                 cacaGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCtggtg                                                                                                                                              >  5:142183/1‑133 (MQ=255)
                 cacaGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCtggtg                                                                                                                                              <  6:142183/133‑1 (MQ=255)
                  acaGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTAcc                                                                                                                             >  6:193801/1‑149 (MQ=255)
                        gTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGgcac                                                                                                                       >  3:75208‑M2/1‑145 (MQ=255)
                            gCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCccggtagcgcatcgagcaccaccagcaccgg                                                                                                                    <  4:234218‑M1/148‑32 (MQ=255)
                             ccACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCgtgt                                                                                                                  <  1:52007/149‑1 (MQ=255)
                              cACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGtt                                                                                                                 <  5:145686/149‑1 (MQ=255)
                                cTATCTCGGGGCAGGTAGCCCTATTATGACCCTTATCAGTATCCATTACTTGTTTATAAGTGCCGACATGACCTAGAACAACCTCGGTCGCTTTCGCCCTGAAACACCGGTTCTGGTGGTGCTCGATTCTCTACCGGGCACCTTGTTGa                                                                                                               <  1:55537/149‑1 (MQ=255)
                                 tATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCccggtagcgcatcgagcaccaccagcaccggg                                                                                                                   <  5:31844‑M1/144‑33 (MQ=255)
                                 tATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCccggtagcgcatcgagcaccaccagcaccggg                                                                                                                   >  6:31844‑M1/1‑112 (MQ=255)
                                 tATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGa                                                                                                               >  3:298650/1‑148 (MQ=255)
                                       ggggCATGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTTTGGATAAGTGCCGACATTACAGAGAACAACCTCGGTCGCTTGCGCCGTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTAACGGTCACCTTGTTGAAAggga                                                                                                         <  4:151315/148‑2 (MQ=255)
                                                    cGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACATCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGAGCTACCGGGCACCGTGTTGAAAGGGCGTATACGAAGAAtt                                                                                           >  4:293381/1‑149 (MQ=255)
                                                      atgatgACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTgg                                                                                         <  5:193801/149‑1 (MQ=255)
                                                      atgatgACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTgg                                                                                         <  2:63663/149‑1 (MQ=255)
                                                       tgatgaCCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGc                                                                                        <  5:100731/149‑1 (MQ=255)
                                                          tgaCCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTAt                                                                                     <  7:167713/149‑1 (MQ=255)
                                                                       tATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTgg                                                                        <  6:197448/149‑1 (MQ=255)
                                                                       tATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAAACTCGGTCGCTTGCGCCCTGAAACCCCGGTTCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTgg                                                                        <  3:293381/149‑1 (MQ=255)
                                                                             tGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCa                                                                    >  1:215126/1‑147 (MQ=255)
                                                                              gACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCagag                                                                 >  8:262253/1‑149 (MQ=255)
                                                                                cGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCa                                                               <  5:73001/149‑1 (MQ=255)
                                                                                 gtgtGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCAc                                                              >  8:259846/1‑149 (MQ=255)
                                                                                      gATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGc                                                                                                         >  1:260202/1‑101 (MQ=255)
                                                                                      gATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGc                                                                                                         <  2:260202/101‑1 (MQ=255)
                                                                                           gTGCGGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGTTGCGCTACCTGGCAGCGTGTTGAAAGGGCGTATACGGAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCggg                                                     <  7:71719/148‑1 (MQ=255)
                                                                                           gTGCCGACATGACCGACAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGAGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCCAGCCGCCggg                                                     >  8:71719/1‑148 (MQ=255)
                                                                                              ccGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACg                                                 >  3:165390/1‑149 (MQ=255)
                                                                                               cGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGc                                                >  5:270632/1‑149 (MQ=255)
                                                                                                  cATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGc                                             <  2:215126/149‑1 (MQ=255)
                                                                                                  cATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGc                                             <  4:6204/149‑1 (MQ=255)
                                                                                                      aCCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGAc                                         >  4:115978/1‑149 (MQ=255)
                                                                                                        cGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCa                                                                    <  7:154255/120‑1 (MQ=255)
                                                                                                        cGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCa                                                                    >  8:154255/1‑120 (MQ=255)
                                                                                                         gagaACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGt                                      >  4:18754/1‑149 (MQ=255)
                                                                                                           gaACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTCCGCTGCCGACCGTg                                     >  8:47963/1‑148 (MQ=255)
                                                                                                               aacCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGaa                                >  6:138431/1‑149 (MQ=255)
                                                                                                                ttcTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAAt                               <  3:243686/147‑1 (MQ=255)
                                                                                                                  cTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAg                             <  3:18754/149‑1 (MQ=255)
                                                                                                                  cTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAg                             <  7:259846/149‑1 (MQ=255)
                                                                                                                    cGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGc                            >  5:209639/1‑148 (MQ=255)
                                                                                                                    cGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGc                            <  6:209639/148‑1 (MQ=255)
                                                                                                                     ggTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGcc                           <  4:298650/148‑1 (MQ=255)
                                                                                                                          cTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGt                     >  8:235956/1‑149 (MQ=255)
                                                                                                                           ttGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTg                    >  4:230858/1‑149 (MQ=255)
                                                                                                                           ttGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGATACGCTGCCGACCGTGCAGAATAGCCGCGAGTg                    >  6:89708/1‑149 (MQ=255)
                                                                                                                                       aCCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGgc        >  4:263111/1‑149 (MQ=255)
                                                                                                                                         cccGGTGCTGGTGGTGCTCGATGCGCTACCGGgcaccggggtttcagggcgcaagcgaccgaggttgttctcggtcatgtcggcacttatccacacgtcatggatactgatcagggtcatcatcgggctacctgccccgacata           >  6:31844‑M2/1‑32 (MQ=255)
                                                                                                                                         cccGGTGCTGGTGGTGCTCGATGCGCTACCGGgcaccggggtttcagggcgcaagcgaccgaggttgttctcggtcatgtcggcacttatccacacgtcatggatactgatcagggtcatcatcgggctacctgccccgacata           <  5:31844‑M2/144‑113 (MQ=255)
                                                                                                                                          ccGGTGCTGGTGGTGCTCGATGCGCTACCGGgcaccggggtttcagggcgcaagcgaccgaggttgttctcggtcatgtcggcacttatccacacgtcatggatactgatcagggtcatcatcgggctacctgccccgacatagtggc      <  4:234218‑M2/148‑118 (MQ=255)
                                                                                                                                          ccGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCgg         <  6:26011/145‑1 (MQ=255)
                                                                                                                                          ccGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCgg         >  5:26011/1‑145 (MQ=255)
                                                                                                                                          ccGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCa     <  5:138431/149‑1 (MQ=255)
                                                                                                                                          ccGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGATACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCa     <  5:89708/149‑1 (MQ=255)
                                                                                                                                             gTGCccggtagcgcatcgagcaccaccagcaccggggtttcagggcgcaagcgaccgaggttgttctcggtcatgtcggcacttatccacacgtcatggatactgatcagggtcatcatcgggctacctgccccgacatagtggccaac  >  3:75208‑M1/1‑4 (MQ=255)
                                                                                                                                                cTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTg                    <  6:98393/128‑1 (MQ=255)
                                                                                                                                                cTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTg                    >  5:98393/1‑128 (MQ=255)
                                                                                                                                                |                                                                                                                                                 
CTGATCACCGACCTGCGCACAGACGTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCAGCG  >  NC_002947/832880‑833169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.