New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 833024	49 (1.000)	3 (0.060)	3/250	NT	6.0%	coding (787/1098 nt)	PP_0716	HlyD family secretion protein
	?	NC_002947	= 833048	48 (1.030)					coding (811/1098 nt)	PP_0716	HlyD family secretion protein

GTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCAGCGCTTTCCGGTGATTATCGAACTGGAGCG  >  NC_002947/832904‑833196                                                                                                                                                 |                                                                                                                                                     gTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGgcac                                                                                                                                                  >  3:75208‑M2/1‑145 (MQ=255)      ccACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCgtgt                                                                                                                                             <  1:52007/149‑1 (MQ=255)       cACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGtt                                                                                                                                            <  5:145686/149‑1 (MQ=255)         cTATCTCGGGGCAGGTAGCCCTATTATGACCCTTATCAGTATCCATTACTTGTTTATAAGTGCCGACATGACCTAGAACAACCTCGGTCGCTTTCGCCCTGAAACACCGGTTCTGGTGGTGCTCGATTCTCTACCGGGCACCTTGTTGa                                                                                                                                          <  1:55537/149‑1 (MQ=255)          tATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGa                                                                                                                                          >  3:298650/1‑148 (MQ=255)                ggggCATGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTTTGGATAAGTGCCGACATTACAGAGAACAACCTCGGTCGCTTGCGCCGTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTAACGGTCACCTTGTTGAAAggga                                                                                                                                    <  4:151315/148‑2 (MQ=255)                             cGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACATCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGAGCTACCGGGCACCGTGTTGAAAGGGCGTATACGAAGAAtt                                                                                                                      >  4:293381/1‑149 (MQ=255)                               atgatgACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTgg                                                                                                                    <  5:193801/149‑1 (MQ=255)                               atgatgACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTgg                                                                                                                    <  2:63663/149‑1 (MQ=255)                                tgatgaCCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGc                                                                                                                   <  5:100731/149‑1 (MQ=255)                                   tgaCCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTAt                                                                                                                <  7:167713/149‑1 (MQ=255)                                                tATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTgg                                                                                                   <  6:197448/149‑1 (MQ=255)                                                tATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAAACTCGGTCGCTTGCGCCCTGAAACCCCGGTTCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTgg                                                                                                   <  3:293381/149‑1 (MQ=255)                                                      tGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCa                                                                                               >  1:215126/1‑147 (MQ=255)                                                       gACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCagag                                                                                            >  8:262253/1‑149 (MQ=255)                                                         cGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCa                                                                                          <  5:73001/149‑1 (MQ=255)                                                          gtgtGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCAc                                                                                         >  8:259846/1‑149 (MQ=255)                                                               gATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGc                                                                                                                                    >  1:260202/1‑101 (MQ=255)                                                               gATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGc                                                                                                                                    <  2:260202/101‑1 (MQ=255)                                                                    gTGCGGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGTTGCGCTACCTGGCAGCGTGTTGAAAGGGCGTATACGGAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCggg                                                                                <  7:71719/148‑1 (MQ=255)                                                                    gTGCCGACATGACCGACAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGAGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCCAGCCGCCggg                                                                                >  8:71719/1‑148 (MQ=255)                                                                       ccGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACg                                                                            >  3:165390/1‑149 (MQ=255)                                                                        cGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGc                                                                           >  5:270632/1‑149 (MQ=255)                                                                           cATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGc                                                                        <  4:6204/149‑1 (MQ=255)                                                                           cATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGc                                                                        <  2:215126/149‑1 (MQ=255)                                                                               aCCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGAc                                                                    >  4:115978/1‑149 (MQ=255)                                                                                 cGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCa                                                                                               <  7:154255/120‑1 (MQ=255)                                                                                 cGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCa                                                                                               >  8:154255/1‑120 (MQ=255)                                                                                  gagaACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGt                                                                 >  4:18754/1‑149 (MQ=255)                                                                                    gaACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTCCGCTGCCGACCGTg                                                                >  8:47963/1‑148 (MQ=255)                                                                                        aacCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGaa                                                           >  6:138431/1‑149 (MQ=255)                                                                                         ttcTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAAt                                                          <  3:243686/147‑1 (MQ=255)                                                                                           cTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAg                                                        <  3:18754/149‑1 (MQ=255)                                                                                           cTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAg                                                        <  7:259846/149‑1 (MQ=255)                                                                                             cGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGc                                                       >  5:209639/1‑148 (MQ=255)                                                                                             cGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGc                                                       <  6:209639/148‑1 (MQ=255)                                                                                              ggTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGcc                                                      <  4:298650/148‑1 (MQ=255)                                                                                                   cTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGt                                                >  8:235956/1‑149 (MQ=255)                                                                                                    ttGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTg                                               >  4:230858/1‑149 (MQ=255)                                                                                                    ttGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGATACGCTGCCGACCGTGCAGAATAGCCGCGAGTg                                               >  6:89708/1‑149 (MQ=255)                                                                                                                aCCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGgc                                   >  4:263111/1‑149 (MQ=255)                                                                                                                  cccGGTGCTGGTGGTGCTCGATGCGCTACCGGgcaccggggtttcagggcgcaagcgaccgaggttgttctcggtcatgtcggcacttatccacacgtcatggatactgatcagggtcatcatcgggctacctgccccgacata                                      <  5:31844‑M2/144‑113 (MQ=255)                                                                                                                  cccGGTGCTGGTGGTGCTCGATGCGCTACCGGgcaccggggtttcagggcgcaagcgaccgaggttgttctcggtcatgtcggcacttatccacacgtcatggatactgatcagggtcatcatcgggctacctgccccgacata                                      >  6:31844‑M2/1‑32 (MQ=255)                                                                                                                   ccGGTGCTGGTGGTGCTCGATGCGCTACCGGgcaccggggtttcagggcgcaagcgaccgaggttgttctcggtcatgtcggcacttatccacacgtcatggatactgatcagggtcatcatcgggctacctgccccgacatagtggc                                 <  4:234218‑M2/148‑118 (MQ=255)                                                                                                                   ccGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCgg                                    <  6:26011/145‑1 (MQ=255)                                                                                                                   ccGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCgg                                    >  5:26011/1‑145 (MQ=255)                                                                                                                   ccGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCa                                <  5:138431/149‑1 (MQ=255)                                                                                                                   ccGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGATACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCa                                <  5:89708/149‑1 (MQ=255)                                                                                                                         cTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTg                                               <  6:98393/128‑1 (MQ=255)                                                                                                                         cTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTg                                               >  5:98393/1‑128 (MQ=255)                                                                                                                          tggtggTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCAGCGCttt                         >  7:270136/1‑149 (MQ=255)                                                                                                                           ggtggtGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGGGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCAGCGCTTTc                        >  5:262537/1‑149 (MQ=255)                                                                                                                                         cgcTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCAGCGCTTTCCGGTGATTATCGaa          <  6:270632/149‑1 (MQ=255)                                                                                                                                           cTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCAGCGCTTTCCGGTGATTATCGAACt        >  2:235854/1‑149 (MQ=255)                                                                                                                                              ccGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCAGCGCTTTCCGGTGATTATCGAACTgg      <  3:263111/148‑1 (MQ=255)                                                                                                                                              ccGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCAGCGCTTTCCGGTGATTATCGAACTg       <  3:115978/147‑1 (MQ=255)                                                                                                                                                gggCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCAGCGCTTTCCGGTGATTATCGAACTGGAgc   <  1:120634/149‑1 (MQ=255)                                                                                                                                                 ggCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCAGCGCTTTCCGGTGATTATCGAACTGGAgcg  <  4:165390/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GTTGGCCACTATGTCGGGGCAGGTAGCCCGATGATGACCCTGATCAGTATCCATGACGTGTGGATAAGTGCCGACATGACCGAGAACAACCTCGGTCGCTTGCGCCCTGAAACCCCGGTGCTGGTGGTGCTCGATGCGCTACCGGGCACCGTGTTGAAAGGGCGTATACGCAGCATTGGCTATGGCGTGAGCGTGGGGCAGAGCACGCCGCCGGGTACGCTGCCGACCGTGCAGAATAGCCGCGAGTGGCTGCGTTCGGCGCAGCGCTTTCCGGTGATTATCGAACTGGAGCG  >  NC_002947/832904‑833196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.