New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1016398	37 (0.760)	3 (0.060)	3/248	NT	7.5%	coding (708/825 nt)	PP_0876	AraC family transcriptional regulator
	?	NC_002947	= 1016433	39 (0.840)					coding (673/825 nt)	PP_0876	AraC family transcriptional regulator

TGGGCGATGCTAGTGGTGTCAGTGGGCGGCTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1016247‑1016398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagcCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCCTTCAGTGCCGGCTTCAACTCGCTGTCGGCGTTCTACAAGTGCTTCCGCGAACACACCGGGTTCACGCCCAAGGCCTACCTGAAGCAAATTTCCCTGCGT  <  NC_002947/1016433‑1016293                                                                                                                                                                                                                                                                                                       TGGGCGATGCTAGTGGTGTCAGTGGGCGGCTGTCTTACCTGCGTGCACGCATGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGG                                                                                                                                                    <  8:197493/147‑1            AGTGGTGTCAGTGGGCGGCTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCC                                                                                                                                                  >  1:157686/1‑138            AGTGGTGTCAGTGGGCGGCTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCC                                                                                                                                                  <  2:157686/138‑1                                               ACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCCT                                                                                                    >  5:80501/1‑149                                                 GCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCCTTC                                                                                                  <  4:167381/149‑1                                                    GGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCCTTCAGT                                                                                               <  6:80501/149‑1                                                                                                                                                  GGCCAGCCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCCTTCAGTGCCGGCTTCAACTCGCTGTCGGCGTTCTACAAGTGCTTCCGCGAACACACCGGGTTCACGCCCAAGGCCTACCTGAAGCAAATTTCCCTGCGT  <  6:248908/148‑1                                                                                                                                                                                                                                                                                                       TGGGCGATGCTAGTGGTGTCAGTGGGCGGCTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1016247‑1016398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagcCTCGGCGACGACAGCGTCGAGGCGACGATCGACGAGCTGGCCTTCAGTGCCGGCTTCAACTCGCTGTCGGCGTTCTACAAGTGCTTCCGCGAACACACCGGGTTCACGCCCAAGGCCTACCTGAAGCAAATTTCCCTGCGT  <  NC_002947/1016433‑1016293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.