New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1016398	37 (0.760)	3 (0.060)	3/248	NT	7.5%	coding (708/825 nt)	PP_0876	AraC family transcriptional regulator
	?	NC_002947	= 1016433	39 (0.840)					coding (673/825 nt)	PP_0876	AraC family transcriptional regulator

GTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAG  >  NC_002947/1016285‑1016581                                                                                                                                                     |                                                                                                                                                      gtgcgtgcACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAg                                                                                                                                                       >  8:226844/1‑149 (MQ=255)         aCGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGgctggcc                                                                                                                                                <  6:248908‑M2/148‑8 (MQ=255)         aCGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCa                                                                                                                                               >  6:263136/1‑149 (MQ=255)               ggAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGt                                                                                                                                         >  3:102024/1‑149 (MQ=255)                gataTTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGtg                                                                                                                                        <  5:184065/146‑1 (MQ=255)                 aaaTTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGtgc                                                                                                                                       >  8:199505/1‑149 (MQ=255)                      tGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCa                                                                                                                                   <  5:66009/148‑1 (MQ=255)                        cTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGc                                                                                                                                <  4:74039/149‑1 (MQ=255)                        cTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGc                                                                                                                                <  3:161762/149‑1 (MQ=255)                        cTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGc                                                                                                                                <  7:226844/149‑1 (MQ=255)                          tCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGt                                                                                                                              >  1:163246/1‑149 (MQ=255)                           cAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGt                                                                                                                              <  8:172821/148‑1 (MQ=255)                             ggTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGcc                                                                                                                           <  7:199505/149‑1 (MQ=255)                                       gggCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAc                                                                                                                   <  5:227574/147‑1 (MQ=255)                                        ggCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑g                                                                                                                 >  2:228157/1‑147 (MQ=255)                                           gTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCg                                                                                                            >  7:184970/1‑149 (MQ=255)                                           gTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCg                                                                                                            >  2:237491/1‑149 (MQ=255)                                              aaCCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGt                                                                                                          <  2:163246/148‑1 (MQ=255)                                                  cGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAg                                                                                                     >  1:162484/1‑149 (MQ=255)                                                     tgtgtTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCtt                                                                                                  <  5:248908/149‑1 (MQ=255)                                                         ttCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGcc                                                                                              >  4:47991/1‑149 (MQ=255)                                                         ttCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTCGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGcc                                                                                              >  1:112261/1‑149 (MQ=255)                                                           cgcgGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGccc                                                                                             <  4:102024/148‑1 (MQ=255)                                                            gcgGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGccc                                                                                             >  6:283611/1‑147 (MQ=255)                                                                    aCTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGTCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTgg                                                                                   <  4:257457/149‑1 (MQ=255)                                                                        gTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGtt                                                                                 >  8:219160/1‑147 (MQ=255)                                                                                             gAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTg                                                           <  5:263136/148‑1 (MQ=255)                                                                                                   ggCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTg                                                     >  6:59767/1‑148 (MQ=255)                                                                                                      aCTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGgctggccttcagtgccggcttcaactcgctgtcggcgttctacaagtgcttccgcgaacacaccgggttcacgcccaaggcctacctgaagcaaatttccc                                                  <  6:80501‑M2/149‑102 (MQ=255)                                                                                                      aCTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGc                                                 >  2:166213/1‑149 (MQ=255)                                                                                                         gAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGgctggccttcagtgccggcttcaactcgctgtcggcgttctacaagtgcttccgcgaacacaccgggttcacgcccaaggcctacctgaagcaaatttccctgc                                               <  4:167381‑M2/149‑105 (MQ=255)                                                                                                           aGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGgctggccttcagtgccggcttcaactcgctgtcggcgttctacaagtgcttccgcgaacacaccgggttcacgcccaaggcctacctgaagcaaatttccctgcgt                                             >  5:80501‑M2/1‑43 (MQ=255)                                                                                                             gCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGc                                          <  5:283611/149‑1 (MQ=255)                                                                                                                  cTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCgg                                     >  5:196791/1‑149 (MQ=255)                                                                                                                     gtcgATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGa                                  <  2:112261/149‑1 (MQ=255)                                                                                                                     gtcgATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGa                                  <  1:166213/149‑1 (MQ=255)                                                                                                                      tcgATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGAc                                 >  2:169249/1‑149 (MQ=255)                                                                                                                       cgATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGAcc                                <  3:47991/149‑1 (MQ=255)                                                                                                                            gtcgCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGtt                            <  2:162484/148‑1 (MQ=255)                                                                                                                            gtcgCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTg                           <  1:228157/149‑1 (MQ=255)                                                                                                                                 cTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACTGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAgg                       >  1:238143/1‑149 (MQ=255)                                                                                                                                  tCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTc                     >  7:52436/1‑149 (MQ=255)                                                                                                                                         tGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCa                                                                            <  6:283164/87‑1 (MQ=255)                                                                                                                                         tGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCa                                                                            >  5:283164/1‑87 (MQ=255)                                                                                                                                           tcgtcgCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCgg            <  1:169249/149‑1 (MQ=255)                                                                                                                                                 ccGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAg      >  8:248504/1‑149 (MQ=255)                                                                                                                                                    aGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTa   <  1:237491/149‑1 (MQ=255)                                                                                                                                                     ggCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAg  >  4:256811/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAC‑GTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAG  >  NC_002947/1016285‑1016581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.