New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1016398	37 (0.760)	3 (0.060)	3/248	NT	7.5%	coding (708/825 nt)	PP_0876	AraC family transcriptional regulator
	?	NC_002947	= 1016433	39 (0.840)					coding (673/825 nt)	PP_0876	AraC family transcriptional regulator

GCTAGTGGTGTCAGTGGGCGGCTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGG  >  NC_002947/1016255‑1016546                                                                                                                                                |                                                                                                                                                     gCTAGTGGTGTCAGTGGGCGGCTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCGGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCtcgt                                                                                                                                                  <  1:92234/148‑1 (MQ=255) gCTAGTGGTGTCAGTGGGCGGCTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCtcgt                                                                                                                                                  >  2:92234/1‑148 (MQ=255)   tAGTGGTGTCAGTGGGCGGCTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCtcgtcg                                                                                                                                                >  6:184065/1‑148 (MQ=255)     gtggtgTCAGTGGGCGGCTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGAtc                                                                                                                                             >  8:41032/1‑149 (MQ=255)     gtggtgTCAGTGGGCGGCTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGAt                                                                                                                                              <  2:166235/148‑1 (MQ=255)             aGTGGGCGGCTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTc                                                                                                                                     >  6:227574/1‑149 (MQ=255)                 ggcggcTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACg                                                                                                                                 <  7:41032/149‑1 (MQ=255)                    ggcTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTg                                                                                                                              >  8:121454/1‑149 (MQ=255)                            tACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGcc                                                                                                                      >  7:172821/1‑149 (MQ=255)                              cgtgcgtgCACGCAGGGAAATTTGCTTCAGGTCGGCCTTGGGCGTGAACCCGGGGTGTTCGCGGAAGCAGTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGa                                                                                                                    <  7:121454/149‑1 (MQ=255)                               gtgcgtgcACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAg                                                                                                                   >  8:226844/1‑149 (MQ=255)                                       aCGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCctcggcgacgacagcgtcgaggcgacgatcgacgagctggcct                                                                                                           >  5:80501‑M1/1‑106 (MQ=255)                                       aCGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGgctggcc                                                                                                            <  6:248908‑M2/148‑8 (MQ=255)                                       aCGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCa                                                                                                           >  6:263136/1‑149 (MQ=255)                                         gCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCctcggcgacgacagcgtcgaggcgacgatcgacgagctggccttc                                                                                                         <  4:167381‑M1/149‑46 (MQ=255)                                            gggAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCctcggcgacgacagcgtcgaggcgacgatcgacgagctggccttcagt                                                                                                      <  6:80501‑M1/149‑49 (MQ=255)                                             ggAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGt                                                                                                     >  3:102024/1‑149 (MQ=255)                                              gataTTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGtg                                                                                                    <  5:184065/146‑1 (MQ=255)                                               aaaTTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGtgc                                                                                                   >  8:199505/1‑149 (MQ=255)                                                    tGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCa                                                                                               <  5:66009/148‑1 (MQ=255)                                                      cTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGc                                                                                            <  4:74039/149‑1 (MQ=255)                                                      cTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGc                                                                                            <  7:226844/149‑1 (MQ=255)                                                      cTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGc                                                                                            <  3:161762/149‑1 (MQ=255)                                                        tCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGt                                                                                          >  1:163246/1‑149 (MQ=255)                                                         cAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGt                                                                                          <  8:172821/148‑1 (MQ=255)                                                           ggTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGcc                                                                                       <  7:199505/149‑1 (MQ=255)                                                                     gggCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGAc                                                                               <  5:227574/147‑1 (MQ=255)                                                                      ggCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACg                                                                              >  2:228157/1‑147 (MQ=255)                                                                         gTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCg                                                                         >  7:184970/1‑149 (MQ=255)                                                                         gTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCg                                                                         >  2:237491/1‑149 (MQ=255)                                                                            aaCCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGt                                                                       <  2:163246/148‑1 (MQ=255)                                                                                cGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAg                                                                  >  1:162484/1‑149 (MQ=255)                                                                                   tgtgtTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCtt                                                               <  5:248908/149‑1 (MQ=255)                                                                                       ttCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGcc                                                           >  4:47991/1‑149 (MQ=255)                                                                                       ttCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTCGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGcc                                                           >  1:112261/1‑149 (MQ=255)                                                                                         cgcgGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGccc                                                          <  4:102024/148‑1 (MQ=255)                                                                                          gcgGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGccc                                                          >  6:283611/1‑147 (MQ=255)                                                                                                  aCTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGTCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTgg                                                <  4:257457/149‑1 (MQ=255)                                                                                                      gTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGtt                                              >  8:219160/1‑147 (MQ=255)                                                                                                                           gAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTg                        <  5:263136/148‑1 (MQ=255)                                                                                                                                 ggCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTg                  >  6:59767/1‑148 (MQ=255)                                                                                                                                    aCTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGgctggccttcagtgccggcttcaactcgctgtcggcgttctacaagtgcttccgcgaacacaccgggttcacgcccaaggcctacctgaagcaaatttccc              <  6:80501‑M2/149‑102 (MQ=255)                                                                                                                                    aCTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGc              >  2:166213/1‑149 (MQ=255)                                                                                                                                       gAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGgctggccttcagtgccggcttcaactcgctgtcggcgttctacaagtgcttccgcgaacacaccgggttcacgcccaaggcctacctgaagcaaatttccctgc           <  4:167381‑M2/149‑105 (MQ=255)                                                                                                                                         aGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGgctggccttcagtgccggcttcaactcgctgtcggcgttctacaagtgcttccgcgaacacaccgggttcacgcccaaggcctacctgaagcaaatttccctgcgt         >  5:80501‑M2/1‑43 (MQ=255)                                                                                                                                          ggCCAGCctcggcgacgacagcgtcgaggcgacgatcgacgagctggccttcagtgccggcttcaactcgctgtcggcgttctacaagtgcttccgcgaacacaccgggttcacgcccaaggcctacctgaagcaaatttccctgcgt         <  6:248908‑M1/148‑142 (MQ=255)                                                                                                                                           gCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGc       <  5:283611/149‑1 (MQ=255)                                                                                                                                                cTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCgg  >  5:196791/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     GCTAGTGGTGTCAGTGGGCGGCTGTCTTACGTGCGTGCACGCAGGGAAATTTGCTTCAGGTAGGCCTTGGGCGTGAACCCGGTGTGTTCGCGGAAGCACTTGTAGAACGCCGACAGCGAGTTGAAGCCGGCACTGAAGGCCAGCTCGTCGATCGTCGCCTCGACGCTGTCGTCGCCGAGGCTGGCCATCAGGTGCTGCAGGCGTGCCTGGTTGACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGG  >  NC_002947/1016255‑1016546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.