New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1487006 =	44 (0.900)	7 (0.190)	7/202	NT	20.3%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487096 =	21 (0.560)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS

ATCGCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1487173‑1487006 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGC  >  NC_002947/1487096‑1487239                                                                                                                                                                                                                                                                                                                          ATCGCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCCCAGGAATTACGCAGGCTCCAAAGCCAGCGCGAAACCTGTGGGAGC                                                                                                                                                                     >  7:239692/1‑149                                                                                 CCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGC                                                                                                                                                                     <  8:138211/69‑1                                                                                      cCGGGCACGCCCGCTCCCAAAGCAATTACGCAGCCTCCAAAGCCAGTGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTC                                                                                                                       <  4:94039/109‑1                                                                                                    TCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGAT                                                                    >  4:137309/1‑147                                                                                                      CCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGC                                                                >  5:98599/1‑149                                                                                                       CACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAG                                                                 <  1:198908/147‑1                                                                                                       CACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAG                                                                 >  2:198908/1‑147                                                                                                        ACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCACGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCT                                                                                                                  >  3:291963/1‑97                                                                                                        ACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCACGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCT                                                                                                                  <  4:291963/97‑1                                                                                                                                                  GAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTC                    >  7:207648/1‑149                                                                                                                                                      GGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTG                <  6:202060/149‑1                                                                                                                                                         CGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGC             <  5:275755/149‑1                                                                                                                                                         CGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGC             <  8:229018/149‑1                                                                                                                                                             CCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGA         >  3:142516/1‑149                                                                                                                                                                  ccAGGGCCGCGTTGCGGCCCTTGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGC    <  1:223038/147‑1                                                                                                                                                                     GGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGC  >  6:150283/1‑148                                                                                                                                                                                                                                                                                                                          ATCGCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1487173‑1487006 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGC  >  NC_002947/1487096‑1487239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.