New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1487006 =	44 (0.900)	7 (0.190)	7/202	NT	20.3%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487096 =	21 (0.560)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS

CGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCT  >  NC_002947/1486949‑1487244                                                                                                                                                      |                                                                                                                                                     cGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGAGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCg                                                                                                                                                     >  3:237277/1‑149 (MQ=255)         gttgttCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCCCCCCCCCAACCCCCGGGTTTGCGGGGGCGTTGG‑GGCCTGGGTAATTGAGGGGGGGGCGGGCGGGCCCGCGAACGGCCGCACAGCgg                                                                                                                                             >  8:239692/1‑149 (MQ=255)               ccTCACCCCGATCCTGCTTTCTTG‑TTTTTGGGCGTGCGGGCCCGCCTTTCGCGGCCCCCCCGGCTCCCACTGTTTTCGCG‑GGGCTTTGGTCGCGTGGTTATTTCCTGGGGTTGGGGGGGTGCCCGCGAAGGGCCGCAACGCGGCCCTgg                                                                                                                                       <  4:8988/149‑1 (MQ=255)                 tCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCCCGCCCCCGACCACAGGTTTTGCGCTGGGGTTGG‑GGCCGGCGGAATTGCTGGGGGTGCGGGGGTGCCCGCGAAGGGGCGCAACCCGGGCCTgggg                                                                                                                                     >  1:127787/1‑148 (MQ=255)                            ctccATTGATGCTGTTTGGGA‑GTCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACCGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTctct                                                                                                                           <  4:237277/145‑1 (MQ=38)                                   caggCTGTTTGGGC‑TGCGCGGCAGCCCTGCGCGGGCACGCCCGCTCCCACTGGTTTAGCGCGGGCTTTGG‑AGCCGGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCctggc                                                                                                                    <  3:46990/145‑1 (MQ=38)                                    aTGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACCCCCCCTCCCACAGGTTTAGCCCTGGCTTTGG‑AGCCTGCGTAAATACAGTGGGAGCGGGCCTGCCCGCCAAAGGCCGCAACCCGGCCCAGGGTTTATTTCTATTCctggctg                                                                                                                  >  8:72023/1‑149 (MQ=255)                                     tGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCctggctgg                                                                                                                 <  7:72023/149‑1 (MQ=255)                                          tttGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCACCCACAGGTTTAGCGCAGGCTTTGG‑AGCCTGCGTAATTCCAGTGGGAGCGGGCGTGCCCGCGAAGGGCCCCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGcc                                                                                                            >  8:122907/1‑149 (MQ=255)                                          gttGGCC‑GGCGCGCCAGCCCTCCGCGGCCCCGCCCGCTCCCACAGGTTTCGCGCTGGCTTGGC‑AGCCGGCGTAATTCCTGGGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGcc                                                                                                            <  8:239191/148‑1 (MQ=37)                                             gggC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCgg                                                                                                          <  7:54831/148‑1 (MQ=255)                                                     gcgGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTg                                                                                                  <  4:290935/149‑1 (MQ=255)                                                                   ccgggcacgcccgctcccaaagcaattacgcagcctccaaagccagtgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTtctc                                                                                                                            <  4:94039‑M2/27‑1 (MQ=255)                                                                              GCTCCCACAGGTTTCGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGGGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGAt                                                                         >  7:239692‑M1/1‑149 (MQ=255)                                                                                 tcccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcTGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGAt                                                                         >  4:137309‑M2/70‑147 (MQ=255)                                                                                   ccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGc                                                                     >  5:98599‑M2/68‑149 (MQ=255)                                                                                    cacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAg                                                                      <  1:198908‑M2/81‑1 (MQ=255)                                                                                    cacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAg                                                                      >  2:198908‑M2/67‑147 (MQ=255)                                                                                     acaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccacgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCct                                                                                                                       <  4:291963‑M2/32‑1 (MQ=255)                                                                                     acaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccacgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCct                                                                                                                       >  3:291963‑M2/66‑97 (MQ=255)                                                                                             gcgcTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActgctg                                                          >  7:229018/1‑149 (MQ=255)                                                                                               gcTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGcc                                                        >  5:202060/1‑149 (MQ=255)                                                                                                cTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTAt                                                                                                                                 <  3:240948/75‑1 (MQ=255)                                                                                                cTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTAt                                                                                                                                 >  4:240948/1‑75 (MQ=255)                                                                                                     tttGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTgc                                                  >  4:158932/1‑149 (MQ=255)                                                                                                       tGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTgcg                                                 <  7:122907/148‑1 (MQ=255)                                                                                                         g‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActg                                                             <  5:267708/134‑1 (MQ=255)                                                                                                         g‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActg                                                             >  6:267708/1‑134 (MQ=255)                                                                                                         g‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCa                                               >  6:31916/1‑148 (MQ=255)                                                                                                               tGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAg                                                                      <  6:148366/120‑1 (MQ=255)                                                                                                                    aaTTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATg                                    >  6:275755/1‑149 (MQ=255)                                                                                                                               gagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTtctc                         >  7:207648‑M2/24‑149 (MQ=255)                                                                                                                                   gggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTg                     <  6:202060‑M2/130‑1 (MQ=255)                                                                                                                                      cgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGc                  <  8:229018‑M2/133‑1 (MQ=255)                                                                                                                                      cgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGc                  <  5:275755‑M2/133‑1 (MQ=255)                                                                                                                                          cccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGa              >  3:142516‑M2/13‑149 (MQ=255)                                                                                                                                               ccagggcCGCGTTGCGGCCCTTGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCcgc         <  1:223038‑M2/142‑1 (MQ=255)                                                                                                                                                  gggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCgcgc       >  6:150283‑M2/5‑148 (MQ=255)                                                                                                                                                      cGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCt  >  8:202648/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGC‑TGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGG‑AGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCT  >  NC_002947/1486949‑1487244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.